SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11261

Length: 1040 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11261

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9S8B8_RICCO	-	-	1.0e-13	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	leucine-rich repeat family protein	-	-	5.13254e-26	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNU9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 253 aas, your sequence is shorter than subject: 346 - 634

Fln protein: VVTLAVTPSSLFFVTGLIFMCISSPYLTINDTSSCLALPILLPALFHVRVQLSCQSVLGVNKPPAEQLAVGRWARGTSD*I*SHG*LRMRGLILPAEEKIRRRHHSKQHWMENHNVMALLLLLVMLSPYFASCYAVSSSSETPSVSPKPPSPKPSPRSKPIKHHPASPSPAPKPSTQHHHHHPSSGAQSAAPSPASAPAKASSHEPVKNGTLDPSQVKALQSLGVIVGTDPCNTDVQQLLICDGHGPLRHLISLQLQYCSSNALLSKSALGSLGTLQSLAFLDCPMKVTPVPQKLADSLETFSCTKSLGRTEDNGDLPGLSGDWLSKLHGLKELKVADVLVNASGI

Protein Length: 347

Fln nts: CGTCGTGACCTTGGCTGTCACTCCATCCTCCTTGTTCTTTGTGACCGGTTTAATATTTATGTGTATATCATCACCGTACCTGACAATCAATGACACTTCCAGCTGTCTGGCTTTGCCCATTTTACTCCCTGCCCTTTTTCATGTCCGTGTTCAACTGAGTTGTCAATCGGTTCTGGGAGTTAATAAACCCCCTGCAGAGCAACTGGCGGTAGGCAGGTGGGCACGGGGGACAAGTGACTAGATTTGAAGCCATGGCTAACTCAGGATGAGAGGTTTAATACTTCCAGCGGAGGAAAAAATAAGGAGGCGGCACCACAGTAAACAGCATTGGATGGAGAACCATAATGTCATGGCTTTGCTTCTCCTCCTGGTAATGTTATCACCATATTTTGCTTCTTGCTATGCAGTTTCATCATCTTCTGAAACGCCCTCTGTTTCGCCCAAACCACCAAGTCCGAAGCCATCCCCTCGCTCTAAACCAATCAAGCATCACCCTGCTTCCCCTTCCCCTGCTCCCAAACCCTCCACACAGCATCATCATCATCATCCCAGTTCTGGTGCCCAGTCTGCTGCCCCTTCCCCTGCTTCTGCCCCTGCCAAAGCATCATCTCACGAGCCAGTAAAAAATGGGACTCTGGATCCTTCCCAGGTAAAAGCACTGCAGTCACTAGGAGTCATAGTGGGCACCGATCCTTGCAACACAGATGTACAGCAACTCTTGATCTGTGATGGGCATGGCCCTCTCAGGCATCTCATTTCACTGCAGCTGCAGTACTGCTCGTCCAACGCCCTACTATCCAAGTCCGCCCTAGGAAGCCTTGGTACATTACAGTCTTTAGCCTTTCTTGATTGCCCAATGAAAGTAACCCCTGTGCCACAAAAGCTTGCAGATTCCTTGGAAACATTTAGCTGCACTAAGAGCCTGGGGCGTACTGAGGACAATGGAGATTTACCAGGTCTTTCAGGAGATTGGCTGAGTAAGCTTCACGGCCTAAAGGAGCTAAAAGTAGCAGACGTACTAGTAAATGCAAGTGGAATAG

Fln Alignment:

sp_v1.1_unigene11261___LDPSQVKALQSLGVIVGTDPCNTDVQQLLICDGHGPLRHLISLQLQYCXXXXXXXXXXXXXXXXXQSLAFLDCPMKVTPVPQKLADSLETFSCTKSLGRTEDNGDLPGLSGDWLSKLHGLKELKVADVLVNASG
B8LNU9_______________LDPKQLAALKSLGVSTVKDPCLPSQQKITVCDSAKP-RHIISLQLQYCSPESQMTKESMETLSTLHSLTFMDCPMSPIRFPVKLVDSLTSFTCISSLGRTLEDQSVQGLSGVWLSKLRNLTKLVVSDVVVNASG

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
75		50		50	1.0
78	25		25		1.0
80		25	50	25	1.0
86	25	25		50	1.0
88		25	50		1.0
90	50	50			1.0
93	50			50	1.0
95	28	28		42	1.0
97		28	28	42	1.0
100	28	14	28		1.0
101	71			28	1.0
103	28	42		28	1.0
104		28		71	1.0
105		28	71		1.0
111		85		14	0.993533
114		28		71	1.0
115	28		71		1.0
118	28	71			1.0
260	85		14		0.999981
366		77	22		0.999999
369		77	22		0.999999
372	22		77		0.999999
373		22		77	0.999999
374	77	22			0.999999
375	77			22	0.999999
379		22		77	0.999999
381	77		22		0.999999
397			10	90	0.90298
400			10	90	0.90298
405	90			10	0.90298
406			10	90	0.90298
409	90			10	0.90298
412		10		90	0.90298
413	10			90	0.90298

SSRs (tot: 1)

Start position	End position	Sequence	Length
533	548	CAT CAT CAT CAT CAT C	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain