SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11231

Length: 564 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene11231
TTAGTTCAAGTGATGCTTACTCAGTTTTACACAGGAAGATAGCAGAATTAAAAGCATATGAATGCCAGACTGCAGCTGTAGAGGTTATATATATGCTAATTGTTCAGAAGTTTGTGGAGCTCAATGTACCGATGGTGCCCAGACTAGTGTCATGTATGGAAAATGGAAAGGTAGATACCTGGCTGCCAAAAGATGAGGAACTAGAATCTATTCATACCCCAGAGATGCTTGACATGATCAGAGAGCATATATCCCGGATTCTAGGCCGAAGAGGCAAATTGAATATTGTTGATAATCACACAATAACTGAGATTGATAGACTAACCCTTGGACGAGTTTATGCTGCTACCATAATGTATGGCTATTTTTTGAGAAGAGCGGAACAGAGATATCAGCTGGAAATGAATTTAGAGACAATATATTCTTATTTGTCTGATGCAGATGATGTAAAGAAATATCTTTTGCACTTAGGAGAAAGTAATTTCTTTACCAGGATTGAGCGTCTCCCTGGTAAGGATGTAAATGCTGTTCCTGTGGCAGACCCATTTACATCCTCCTTGGTGG

Ace file of the UniGene sp_v1.1_unigene11231 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF760 domain containing protein	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	unknown [Picea sitchensis]	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF760	IPR008479	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKC1

Fln msg: Distance to subject end: 102 aas, your sequence is shorter than subject: 187 - 420

Fln protein: SSSDAYSVLHRKIAELKAYECQTAAVEVIYMLIVQKFVELNVPMVPRLVSCMENGKVDTWLPKDEELESIHTPEMLDMIREHISRILGRRGKLNIVDNHTITEIDRLTLGRVYAATIMYGYFLRRAEQRYQLEMNLETIYSYLSDADDVKKYLLHLGESNFFTRIERLPGKDVNAVPVADPFTSSLV

Protein Length: 188

Fln nts: TTAGTTCAAGTGATGCTTACTCAGTTTTACACAGGAAGATAGCAGAATTAAAAGCATATGAATGCCAGACTGCAGCTGTAGAGGTTATATATATGCTAATTGTTCAGAAGTTTGTGGAGCTCAATGTACCGATGGTGCCCAGACTAGTGTCATGTATGGAAAATGGAAAGGTAGATACCTGGCTGCCAAAAGATGAGGAACTAGAATCTATTCATACCCCAGAGATGCTTGACATGATCAGAGAGCATATATCCCGGATTCTAGGCCGAAGAGGCAAATTGAATATTGTTGATAATCACACAATAACTGAGATTGATAGACTAACCCTTGGACGAGTTTATGCTGCTACCATAATGTATGGCTATTTTTTGAGAAGAGCGGAACAGAGATATCAGCTGGAAATGAATTTAGAGACAATATATTCTTATTTGTCTGATGCAGATGATGTAAAGAAATATCTTTTGCACTTAGGAGAAAGTAATTTCTTTACCAGGATTGAGCGTCTCCCTGGTAAGGATGTAAATGCTGTTCCTGTGGCAGACCCATTTACATCCTCCTTGGTGG

Fln Alignment:

sp_v1.1_unigene11231___SSSDAYSVLHRKIAELKAYECQTAAVEVIYMLIVQKFVELNVPMVPRLVSCMENGKVDTWLPKDEELESIHTPEMLDMIREHISRILGRRGKLNIVDNHTITEIDRLTLGRVYAATIMYGYFLRRAEQRYQLEMNLETIYSYLSDADDVKKYLLHLGESNFFTRIERLPGKDVNAVPVADPFTSSLV
B8LKC1_______________SSSDAYSVLHRKIAELKAHECQTAAGEVIYMLIVQKFVELNVPMVPRLVSCMENGKVDTWLPKNEELESIHSPEMLEMIREHISRILGRRGKLNIVDNRTITEIDRLTLGRVYAATIMYGYFLRRAEQRYQLEMNLETIYSYLSDADDVKKYLLHLGESKFFTRTKCLSGKDLDAIPVADPSTSSLV

SNPs (tot: 3)

Position	A %	G %	Probability
251	83	16	0.994512
276	83	16	0.994512
317	83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain