SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11219

Length: 2247 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene11219
GGATCTTCCAGAGTAATTCCACCGAATCTAATGGTTCTCAAGGTCACGAGGTTAAACGTGCTGCTCAACCTATGAAGAAAGCACAAGCAGAAATTCAATGGAGGCCATTGAAACTTATTTTGACCATGATATAAGGCTTAGTCGAATGCCAGACAAATGCAAATTTATGGAGTTGAGAGAAATAGTGAGGAAACGGTTCTCCTCGTCCAAGGCAGTTTTAATAAAATACAAGGATTTGGATGGGGATCTTGTGACTATTACAACTACAGAAGAGCTTAGATTGGCAGAGGCTGCTGCGGCTCAGCTTGCTGAGCAGAAAAGGACAGGGAACTCAAACACAGACTCCTCTGCAAATGGGGGCTTGAACGACAAAGAGAGCATTCCTAATCAAAGTCTTTCAAATGATCCTTTGAGGCTGTATGTGGTTGAGGTGAATCCTGAGCAGGAGCCATTGATTGAAGAAGAGGAGGAACCTCTAGTAGATGGAGTTCAAGAAGAGGATGTTAAAGCAGAGGAGAATGCTTCTGGTTCATCAGGAGAAAGCAATGGTAGCATAGTCGAAGACCCAAGCAAAGAACCTAATAAGCAGGTATCCTTGGAGGAAACTTGTAAAGACAAAAACGGGGATGAGCTTGAAGGCAAAGAAGTTGAAATTGATGACTGGCTATTTGAATTTGCTCAGTTGTTTCGCACACATGTAGGCATTGATCCAGATGCTCACTTGGATCTGCATGAGCTAGGAATGGAGCTATGCTCTGAGGCATTGGAGGAAACTGTGACCAGTGAAGAAGCCCAGCGCCTTTTTGAGATGGCAGCATGCAAGTTCCAGGAGGTGGCAGCTTTGGCATTCTTCAATTGGGGAAATGTCCATATGTGTGCAGCTAGGAAGCGGATTCCTTTGGAAGAAAATCCTTCAAAGGAACTGGTTACGGCACAACTACAGACTGCATATGATTGGGTCCAGGATCAATACTCCCAAGCTGGACAAAAGTATGACGAAGCTTTGAGGATCAAGCCTGACTTCTATGAGGGATTGCTTGCTCTGGGTCAACAATATTTTGAGAGTGCAAAACTTCGATGGTCTTTTGCTTTGGCTAGCAAGGTTGATCTTGCTACATGGGATTCTTCAGAAACTATCCAGTTTTTCAATAGTGCAGAGGAGAAGATGCGGACTGCAACTGAAATGTGGGAGAAGCTAGAAGAGCAGCGCCAAAATGAGTTAAAAGATCCATCTGCAACTAAGAAGGATGAAATCCTGAAAGAAAAGGAAACTGGCTGGGGTTGATGGAGATTCTACTGAGGAGATAGCAGCATCTGCTGCTGAAGCAGCAGAACAAGCTACTGTAATGAGATCTCAGATCCATCTATTTGGGGGAAACATGCTTTTTGAACGTTCACAAGTGGAGTTCAGATTGGAAGACCCAACATGGAAAGAGCACCTGGATGCTGCTGTTGAGAGGTTTAAGCTTGCTGGAGCTTCTTCAGTAGATATTGAAACTGTGCTGAAGAATCATTCATCTAATGCAACCAATCAAGAAGGCAATGATGTCAAAACAGAAATTCCAGATGCAGATGTTGCCAGAGAAGAGACTGAAGACAAAGGTAAGGATGGAAATAGAGAGGAGACTATTCAATAATGTTCAGAAGATTCTAGGGAACATCTCCTTTGACATGCCATTTTGACAGGTATTTCAGCAATGCAAATGACAAATTCTTCAGTATTTATATAGGTGAAAATGGGCAAATCGTTCTGAACGAAACATATTACAGGGTTTTGCAGTAGTGTTGATCGTAATCATTAAATACTGCAGGCGTAGGACAGAGTATCAAAGGCTGGAAGGCAGTCTTATAGGACATCACTGGTTGGAATAATTGTTCCAAGGAACATTCTGACACTTGGAAAATGTCCTACAGCGTGGTTTTTTCACAATGCACGGGGTTCTCCAGTTTGCTTATGTTTTAAGCCTTATCCATGTTCTAGTTGTACTCATACAAACGGACATGATAAGCAACCAATTTCACTTGCTTTTCATATGGTTCATTTGGTTTGGCACGATCAATACTTGTCTTATGATATCTTTGTTTACGCAAGCACGAGTGTTTGTGTTTGTGCTTGTGGGGTGTGTAAGAGAAGAGGGAGGAAGGGATACCCTTTGCAATCTGTGACCAAGTTTGAGAAATGAAACACAACAAATTACATAAGAAATCTTCTACAGCTTCAAAACAAAGCTGGCAGCAGTCTAATTC

Ace file of the UniGene sp_v1.1_unigene11219

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	63%
Blast2go	heat shock protein 70 -interacting	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	response to stress	GO:0006950	Biological Process	78%
Blast2go	binding	GO:0005488	Molecular Function	78%
Blast2go	plastid	GO:0009536	Cellular Component	78%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPT9

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 26 aas,

Fln protein: MRSQIHLFGGNMLFERSQVEFRLEDPTWKEHLDAAVERFKLAGASSVDIETVLKNHSSNATNQEGNDVKTEIPDADVAREETEDKGKDGNREETIQ*

Protein Length: 98

Fln nts: GGATCTTCCAGAGTAATTCCACCGAATCTAATGGTTCTCAAGGTCACGAGGTTAAACGTGCTGCTCAACCTATGAAGAAAGCACAAGCAGAAATTCAATGGAGGCCATTGAAACTTATTTTGACCATGATATAAGGCTTAGTCGAATGCCAGACAAATGCAAATTTATGGAGTTGAGAGAAATAGTGAGGAAACGGTTCTCCTCGTCCAAGGCAGTTTTAATAAAATACAAGGATTTGGATGGGGATCTTGTGACTATTACAACTACAGAAGAGCTTAGATTGGCAGAGGCTGCTGCGGCTCAGCTTGCTGAGCAGAAAAGGACAGGGAACTCAAACACAGACTCCTCTGCAAATGGGGGCTTGAACGACAAAGAGAGCATTCCTAATCAAAGTCTTTCAAATGATCCTTTGAGGCTGTATGTGGTTGAGGTGAATCCTGAGCAGGAGCCATTGATTGAAGAAGAGGAGGAACCTCTAGTAGATGGAGTTCAAGAAGAGGATGTTAAAGCAGAGGAGAATGCTTCTGGTTCATCAGGAGAAAGCAATGGTAGCATAGTCGAAGACCCAAGCAAAGAACCTAATAAGCAGGTATCCTTGGAGGAAACTTGTAAAGACAAAAACGGGGATGAGCTTGAAGGCAAAGAAGTTGAAATTGATGACTGGCTATTTGAATTTGCTCAGTTGTTTCGCACACATGTAGGCATTGATCCAGATGCTCACTTGGATCTGCATGAGCTAGGAATGGAGCTATGCTCTGAGGCATTGGAGGAAACTGTGACCAGTGAAGAAGCCCAGCGCCTTTTTGAGATGGCAGCATGCAAGTTCCAGGAGGTGGCAGCTTTGGCATTCTTCAATTGGGGAAATGTCCATATGTGTGCAGCTAGGAAGCGGATTCCTTTGGAAGAAAATCCTTCAAAGGAACTGGTTACGGCACAACTACAGACTGCATATGATTGGGTCCAGGATCAATACTCCCAAGCTGGACAAAAGTATGACGAAGCTTTGAGGATCAAGCCTGACTTCTATGAGGGATTGCTTGCTCTGGGTCAACAATATTTTGAGAGTGCAAAACTTCGATGGTCTTTTGCTTTGGCTAGCAAGGTTGATCTTGCTACATGGGATTCTTCAGAAACTATCCAGTTTTTCAATAGTGCAGAGGAGAAGATGCGGACTGCAACTGAAATGTGGGAGAAGCTAGAAGAGCAGCGCCAAAATGAGTTAAAAGATCCATCTGCAACTAAGAAGGATGAAATCCTGAAAGAAAAGGAAACTGGCTGGGGTTGATGGAGATTCTACTGAGGAGATAGCAGCATCTGCTGCTGAAGCAGCAGAACAAGCTACTGTA_-_ATGAGATCTCAGATCCATCTATTTGGGGGAAACATGCTTTTTGAACGTTCACAAGTGGAGTTCAGATTGGAAGACCCAACATGGAAAGAGCACCTGGATGCTGCTGTTGAGAGGTTTAAGCTTGCTGGAGCTTCTTCAGTAGATATTGAAACTGTGCTGAAGAATCATTCATCTAATGCAACCAATCAAGAAGGCAATGATGTCAAAACAGAAATTCCAGATGCAGATGTTGCCAGAGAAGAGACTGAAGACAAAGGTAAGGATGGAAATAGAGAGGAGACTATTCAATAA___TGTTCAGAAGATTCTAGGGAACATCTCCTTTGACATGCCATTTTGACAGGTATTTCAGCAATGCAAATGACAAATTCTTCAGTATTTATATAGGTGAAAATGGGCAAATCGTTCTGAACGAAACATATTACAGGGTTTTGCAGTAGTGTTGATCGTAATCATTAAATACTGCAGGCGTAGGACAGAGTATCAAAGGCTGGAAGGCAGTCTTATAGGACATCACTGGTTGGAATAATTGTTCCAAGGAACATTCTGACACTTGGAAAATGTCCTACAGCGTGGTTTTTTCACAATGCACGGGGTTCTCCAGTTTGCTTATGTTTTAAGCCTTATCCATGTTCTAGTTGTACTCATACAAACGGACATGATAAGCAACCAATTTCACTTGCTTTTCATATGGTTCATTTGGTTTGGCACGATCAATACTTGTCTTATGATATCTTTGTTTACGCAAGCACGAGTGTTTGTGTTTGTGCTTGTGGGGTGTGTAAGAGAAGAGGGAGGAAGGGATACCCTTTGCAATCTGTGACCAAGTTTGAGAAATGAAACACAACAAATTACATAAGAAATCTTCTACAGCTTCAAAACAAAGCTGGCAGCAGTCTAATTC

Fln Alignment:

sp_v1.1_unigene11219___WKEHLDAAVERFKLAGASSVDIETVLKNHSSNATNQEGNDVKTE
B8LPT9_______________WKEHLDAAIEKFKLAGASPKEVAIVVKNHSSNESTQEGLGFKTD

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
895		25	75		1.0
918	16	83			0.994512
976		60		40	1.0
1307			75	25	0.996473
1377			66	33	0.997452
1617			33	66	0.997452
1789	75			25	1.0
1814			10	90	0.90298
1815			90	10	0.90298
1817	90		10		0.90298
1818			90	10	0.90298
1822		10	90		0.90298
1824	90			10	0.90298
1829	90			10	0.90298
1831	90			10	0.90298
1832		10	90		0.90298
1833	10			90	0.90298
1834	90	10			0.90298
1840	10		90		0.90298
1881		33		66	1.0
1935	88		11		0.923564
1936		88		11	0.923564
1937	88	11			0.923564
1938	88		11		0.923564
1942	88	11			0.923564
1943		88		11	0.923564
1947			88	11	0.923564
1950	11			88	0.923564
1954	11	88			0.923564
1998		72	27		1.0
1999	72		27		1.0
2064		12	87		0.992554
2102		87		12	0.992554
2127		25	50		0.995533
2128		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain