SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11190

Length: 1015 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11190

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	2-oxoglutarate dehydrogenase, putative (EC:1.2.4.2); K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]	-	-	81%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	83%
Blast2go	2-oxoglutarate e1 subunit	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxoglutarate dehydrogenase (succinyl-transferring).	EC:1.2.4.2	-	0.0	88%

Source	KEGGs	Term	Identity
Blast2go	Citrate cycle (TCA cycle)	00020	88%
Blast2go	Lysine degradation	00310	88%
Blast2go	Tryptophan metabolism	00380	88%
Blast2go	Biosynthesis of phenylpropanoids	01061	88%
Blast2go	Biosynthesis of terpenoids and steroids	01062	88%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	88%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	88%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	88%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	88%
Blast2go	Biosynthesis of plant hormones	01070	88%
Blast2go	Metabolic pathways	01100	88%
Blast2go	Biosynthesis of secondary metabolites	01110	88%

Source	ECs	Term	Type	e value	Identity
AutoFact	Oxoglutarate dehydrogenase (succinyl-transferring).	EC:1.2.4.2	-	0.0	81%

Source	KEGGs	Term	Identity
AutoFact	Citrate cycle (TCA cycle)	00020	81%
AutoFact	Lysine degradation	00310	81%
AutoFact	Tryptophan metabolism	00380	81%
AutoFact	Biosynthesis of phenylpropanoids	01061	81%
AutoFact	Biosynthesis of terpenoids and steroids	01062	81%
AutoFact	Biosynthesis of alkaloids derived from shikimate pathway	01063	81%
AutoFact	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	81%
AutoFact	Biosynthesis of alkaloids derived from histidine and purine	01065	81%
AutoFact	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	81%
AutoFact	Biosynthesis of plant hormones	01070	81%
AutoFact	Metabolic pathways	01100	81%
AutoFact	Biosynthesis of secondary metabolites	01110	81%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	88%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	88%
Blast2go	glycolysis	GO:0006096	Biological Process	88%
Blast2go	oxoglutarate dehydrogenase (succinyl-transferring) activity	GO:0004591	Molecular Function	88%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	88%
Blast2go	thiamine pyrophosphate binding	GO:0030976	Molecular Function	88%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	88%
Blast2go	mitochondrion	GO:0005739	Cellular Component	88%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9HTM3

Fln msg: Separated hits, possible frame ERROR between 381 and 384, Distance to subject end: 454 aas, your sequence is shorter than subject: 338 - 1021

Fln protein: RRDLGCRLILDGLIWRAQFENFLATKWTAAKRFGLEGAETLIPSMKEMIDRSADLGVESIVIGMSHRGRLNVLGNVVRKPLRQIFSEFSGGIKPAGAETGWYTGSGDVKYHLGTSYDRPTRGDVSYxxNLSLVANPSHLEAVDPVVIGKTRAKQYYSTDKDRIKNMGILIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVINNQVAFTTDPESGRSSQYCTDAAKALSVPIFHVNGDDVEAVVHACELAAEWRQTFQSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQVIRSHPPALDLYEKSS*NQGIVKREIDKMRIKVLSILNEEFVNSKDYV

Protein Length: 339

Fln nts: CGTCGTGACCTTGGCTGTCGacTtATTTTGGATgGaCTGATTTGGcGTGCtCAGTTTGAGAACTTTCTGGCCACTAAATGGACCGCCGCAAAACGGTTTGGTCTCGAGGGGGCAGAAACTTTGATTCCAAGTATGAAGGAGATGATTGACAGATCGGCGGATTTGGGTGTTGAAAGTATAGTTATCGGTATGTCTCACAGAGGAAGGTTGAATGTACTGGGGAATGTGGTAAGGAAACCCTTGCGGCAGATTTTCAGTGAATTTAGCGGCGGTATTAAGCCAGCCGGTGCCGAAACCGGGTGGTATACTGGCTCCGGGGATGTGAAATACCACCTTGGGACTTCATATGACCGGCCGACGCGTGGTGACGTAAGCTATCAxxxCAATCTCTCTCTGGTTGCCAATCCCAGCCATCTCGAGGCAGTGGATCCTGTCGTTATAGGAAAAACAAGGGCAAAGCAGTATTATTCTACCGACAAGGATCGGATAAAGAATATGGGGATTTTGATTCATGGAGACGGAAGTTTTGCCGGACAAGGGGTGGTTTACGAGACTTTGCATCTCAGTGCTTTGCCGAACTACACTACTGGCGGGACCATTCATATTGTGATTAATAATCAGGTTGCTTTCACTACTGATCCTGAATCTGGCAGATCCTCGCAGTATTGTACTGATGCCGCAAAGGCTTTGAGTGTGCCCATTTTCCATGTGAATGGCGATGATGTTGAAGCTGTCGTGCATGCATGTGAACTTGCCGCAGAATGGCGGCAGACCTTCCAGTCTGATGTCGTTGTTGATCTTGTTTGTTATCGCAGGTTTGGGCATAATGAGATTGATGAACCATCTTTCACTCAACCGAAGATGTATCAGGTTATTAGAAGCCATCCACCAGCACTAGATCTGTATGAAAAGAGCTCATAGAATCAGGGGATTGTCAAAAGAGAAATTGACAAAATGCGTATAAAGGTTTTGTCAATTTTGAATGAAGAGTTTGTAAACAGCAAAGATTATGTTCC

Fln Alignment:

sp_v1.1_unigene11190___LILDGLIWRAQFENFLATKWTAAKRFGLEGAETLIPSMKEMIDRSADLGVESIVIGMSHRGRLNVLGNVVRKPLRQIFSEFSGGIKPAGAETGWYTGSGDVKYHLGTSYDRPTRGDVSYHxNLSLVANPSHLEAVDPVVIGKTRAKQYYSTDKDRIKNMGILIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVINNQVAFTTDPESGRSSQYCTDAAKALSVPIFHVNGDDVEAVVHACELAAEWRQTFQSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQVIRSHPPALDLYEKSS*NQG-IVKREIDKMRIKVLSILNEEFVNSKDYV
B9HTM3_______________VILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRSADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVD-EVGLYTGTGDVKYHLGTSYDRPTRGGKRIHxHLSLVANPSHLEAVDPVVVGKTRAKQYYSNDSDRTKNMGILIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTDVAKALNAPIFHVNGDDMEAVVHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQVIRNHPSALEIYKKKLLESGQVTEEDISRIQEKVLSILNEEFLASKDYV

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
553	16			83	0.994512
555			16	83	0.994512
556	83		16		0.994512
557		83	16		0.994512
699	83		16		0.994512
800		20		80	0.995493
807		20		80	0.995493
812			20	80	0.995493
813		20		80	0.995493
817		20		80	0.995493
823	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain