SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11176

Length: 1836 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11176

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transcription factor hy5, putative	-	-	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	bzip family transcription factor	-	-	50%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Basic-leucine zipper domain	IPR004827	-	0.0	50%
Blast2go	bZIP transcription factor, bZIP-1	IPR011616	-	0.0	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8D1

Fln msg: your sequence is longer than subject: 573 - 323

Fln protein: MRNRESAQLSRQRKKSYIDELEEKVKSMNSTITELNNTIAFMNAENIKLKQQLGVLCQPGNAANQHPVTPLPMPYPWPPFPAYPAPVMAGGNGGRVPLLPIPRLKSHSQQQPSTPSKDRKPSKSASAAVSSEQKPAKKRIKKVASVAFLGFFFFIFFLLRICQLPDAKDLILRESSRELLGNSIEGLYRGGLLLKPRSGGRVLTSWDKGGNSTDVIDMDIGAGRLTGSEKRHDKRNPTFTDHYRHSDNDRMKMNSYIYPENNNSTALVASLFVPRNDKLVKIDGNLIIHAVLAGEKASRALSASQSRGNKDGHVDTISLQKEYEKNSLAVRTERHRALAAAAAATTDSARNVDTNTKFLGDAAQNPNYRALASNFKTSYRDDMESTAVDRSLKQWFQEGLAGPVLSSGMCTEVFQFDASPNSPSTTTNSKLVTRVASRIANNSSGQFSNNSSGSKINETRRSGSVYMSKNRRVSYAVPLPPARPPLKDRNERNFTDHAEIIHEERQYRGNNTAPSSMVVSILVDPRETNDDGMLSSGSLSRIFVVVLVDSVKYVTYSCVLPSKGSGPHLVTR*

Protein Length: 574

Fln nts: GCGAGGCTG_-_ATGAGGAATAGGGAAAGCGCTCAGCTGTCCAGACAAAGGAAGAAGAGTTACATTGACGAGCTGGAAGAGAAGGTAAAATCCATGAATTCTACGATTACCGAGTTGAATAACACCATTGCTTTTATGAATGCCGAAAATATTAAGTTAAAGCAGCAATTAGGGGTCCTCTGTCAGCCCGGTAATGCGGCAAACCAACATCCGGTGACGCCCTTGCCTATGCCTTACCCGTGGCCTCCATTTCCTGCTTACCCGGCGCCAGTTATGGCCGGTGGCAACGGAGGAAGGGTTCCTTTGCTCCCTATACCTAGACTGAAATCTCACTCGCAGCAGCAGCCTTCAACACCCTCCAAGGACCGAAAGCCCTCAAAAAGTGCTTCTGCTGCAGTTAGTTCTGAGCAGAAACCGGCAAAGAAGAGAATCAAGAAGGTTGCTAGTGTTGCTTTTCTAGGGTTTTTCTTCTTTATATTTTTCCTTCTGCGGATATGTCAACTTCCCGATGCAAAAGATTTAATACTTAGAGAAAGTAGCAGAGAATTGCTCGGTAATAGCATAGAGGGATTATACAGAGGTGGATTGTTATTGAAACCCAGAAGTGGAGGTAGAGTCTTGACAAGTTGGGACAAAGGCGGGAATTCCACGGATGTTATAGATATGGATATAGGGGCTGGGAGACTAACAGGTTCTGAAAAGAGACATGACAAACGGAATCCTACATTTACAGACCATTATAGACATTCAGACAATGATCGAATGAAGATGAACAGCTACATATATCCAGAAAACAACAATAGCACGGCGCTTGTTGCGTCTCTGTTTGTTCCCAGGAACGACAAACTTGTAAAGATCGATGGTAACCTTATAATCCATGCAGTTCTAGCTGGGGAAAAAGCCTCGAGAGCATTATCTGCCTCACAGTCTAGAGGCAACAAAGATGGGCATGTAGACACCATTTCACTTCAAAAGGAATATGAAAAGAATAGTTTGGCAGTGAGAACAGAAAGGCATCGTGCTCTTGCTGCTGCTGCTGCCGCCACTACAGATTCAGCCAGAAATGTAGACACTAACACTAAATTTCTTGGAGACGCTGCACAAAATCCGAATTACAGAGCGTTGGCCTCTAACTTCAAGACTAGCTACAGAGATGATATGGAATCAACGGCAGTGGATAGATCACTTAAGCAATGGTTTCAAGAAGGGCTTGCAGGACCTGTTTTGAGCTCAGGAATGTGTACGGAAGTCTTTCAGTTTGATGCATCTCCAAACTCTCCCTCAACAACCACAAATTCCAAGCTTGTGACACGTGTTGCTTCAAGGATTGCAAATAATTCAAGTGGGCAGTTCAGTAATAATTCTTCAGGATCAAAGATAAATGAAACTCGTAGATCAGGTTCAGTCTATATGTCAAAGAACAGAAGAGTTTCATATGCAGTTCCCTTACCCCCTGCTAGGCCCCCACTTAAGGATAGAAATGAAAGGAACTTCACGGATCATGCTGAAATTATTCATGAAGAGAGACAATACAGAGGGAACAATACAGCACCATCGTCAATGGTTGTCTCCATTTTGGTAGATCCAAGGGAGACTAATGATGATGGGATGCTGTCATCTGGAAGTCTGTCCAGGATTTTTGTTGTGGTTCTTGTTGACAGTGTGAAATATGTAACTTACTCTTGTGTACTTCCCTCAAAGGGCTCCGGACCTCATTTAGTGACGAGATGA___GGAACACCTTTGAAGAAATTTGAGTTCAGGTAAGAACATAAAATGTTAGAAATCTCTGTTTTGTTTCCAATCAAAAAATAGACCAAATAAAGTCTACTGCGAGTAAAC

Fln Alignment:

sp_v1.1_unigene11176___MKMNSYIYPENNNSTALVASLFVPRNDKLVKIDGNLIIHAVLAGEKASRALSASQSRGNKDGHVDTISLQKEYEKNSLAVRTERHRXXXXXXXXTTDSARNVDTNTKFLGDAAQNPNYRALASNFKTSYRDDMESTAVDRSLKQWFQEGLAGPVLSSGMCTEVFQFDAXXXXXXXXXXXKLVTRVASRIAXXXXXXXXXXXXXXKINETRRSGSVYMSKNRRVSYAVPLPPARPPLKDRNERNFTDHAEIIHEERQYRGNNTAPSSMVVSILVDPRETNDDGMLSSGSLSRIFVVVLVDSVKYVTYSCVLPSKGSGPHLVTR
D5A8D1_______________MKMNSYIYPENNGSVALVASLFVPRNDKLVKIDGNLIIHAVLAGEKASRASSASQSRGNKDGHVDTISLKKESEKNSLAVRTERHRALAAAAAATTDSGRNVDTNTKFLGDAAENPNYRALASNFRTSYRDDMESTAVDRSLQQWFQEGLAGPVLSSGMCTEVFQFDASPNSPSTTANSKLVTSVASRIANNSGGRPSNNSSGSKINEARRSAPVYMSKNRRVSYAVPLPPAGPPLKDRNERNFTDHAEIIHDERGYRGNNTAPSSMVVSILVDPRETNDDGMLSSGSLSRIFVVVLVDSVKYVTYSCVLPAKGSGPHLVTR

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
115	66		33		0.997452
291			83	16	0.994512
293	83		16		0.994512
294	83		16		0.994512
316	12	87			0.992554
1008			83	16	0.994512
1009	83		16		0.994512
1010	83		16		0.994512
1011	83		16		0.994512
1034		16		83	0.994512
1050			85	14	0.993533
1051	85		14		0.993533
1052			14	85	0.993533
1053			14	85	0.993533
1087	14			85	0.993533
1091	85		14		0.993533
1158	83		16		0.994512
1159			16	83	0.994512
1255	87	12			0.992554
1256		12	87		0.992554
1259			12	87	0.992554
1261	87	12			0.992554
1323	73	26			1.0
1325			73	26	1.0
1326	73	26			1.0
1327			26	73	1.0
1332	73	21			1.0
1333	73	5		21	1.0
1334	73			26	1.0
1335			21	78	1.0
1336	73		26		1.0
1337	73	26			1.0
1343	73	21		5	1.0
1344	5	5	73	15	1.0
1345	5	36		57	1.0
1346	15		84		1.0
1350	89			10	0.999919
1804	16	83			0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
1023	1037	TGC TGC TGC TGC TGC	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain