SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11160

Length: 1205 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11160

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	boron transporter	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	boron transporter	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	anion transport	GO:0006820	Biological Process	92%
Blast2go	response to boron-containing substance	GO:0010036	Biological Process	92%
Blast2go	borate transport	GO:0046713	Biological Process	92%
Blast2go	borate efflux transmembrane transporter activity	GO:0080139	Molecular Function	92%
Blast2go	inorganic anion exchanger activity	GO:0005452	Molecular Function	92%
Blast2go	endosome	GO:0005768	Cellular Component	92%
Blast2go	vacuole	GO:0005773	Cellular Component	92%
Blast2go	lateral plasma membrane	GO:0016328	Cellular Component	92%
Blast2go	columella	GO:0043674	Cellular Component	92%
Blast2go	integral to membrane	GO:0016021	Cellular Component	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Bicarbonate transporter, eukaryotic	IPR003020	-	0.0	92%
Blast2go	Bicarbonate transporter, C-terminal	IPR011531	-	0.0	92%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRN9

Fln msg: Distance to subject end: 279 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 401 - 671

Fln protein: IIQHLCASFHQSIYHGGDFCAIPRNKNDLKGRLLCYKQDWTGGFNAGFRILAPTTYIFFASAIPVISFGEQLDRNGILTAVQTLSSTAICGIIHSIFGGQPLLILGVAEPTVLMYTFMYNFAKDREDLGPKLFLAWTGWVCVWTAFLLVLLAILGACSIINRFTRVAGELFGMLIAMLFVQQAIRGAVDEFRVPKMDNPKLEQFTNSWRFGNGMFALVLSFGLLFSGLQSRKARSWRYGTGWLRGLIADYGVPLMVLVWTGVSYIPRGHVPDGIPRRLFSPNPWSPGAYDNWTVIKEMLDVPLLYIIGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSFHYDLLLLGFLVIICGLIGIPPSNGVIPQSPMHTKSLATLKHQLVRDRLVKTAKKSIK

Protein Length: 402

Fln nts: GATTATACAACACTTATGTGCAAGTTTCCACCAATCTATCTATCATGGAGGAGACTTTTGTGCCATTCCGAGGAATAAAAATGACCTGAAAGGAAGGTTGCTGTGTTACAAACAAGACTGGACTGGTGGTTTCAATGCAGGATTCAGGATACTTGCTCCCACAACGTACATATTCTTCGCTTCTGCTATTCCAGTGATTTCGTTTGGAGAACAATTGGACAGAAATGGAATCCTGACCGCAGTTCAAACACTGTCATCTACTGCAATATGTGGCATCATCCATTCTATTTTCGGGGGTCAGCCTTTGTTAATTCTTGGGGTGGCTGAACCTACTGTGCTTATGTATACATTCATGTACAACTTTGCCAAAGACAGAGAAGATTTAGGCCCAAAGTTGTTTCTGGCTTGGACAGGGTGGGTATGTGTTTGGACTGCATTCTTGTTGGTTTTGCTGGCCATTCTGGGTGCATGCTCAATTATCAACAGGTTTACCAGGGTAGCTGGAGAACTTTTTGGGATGCTCATTGCCATGTTGTTCGTGCAGCAGGCTATCCGGGGTGCTGTGGATGAATTTCGGGTCCCAAAGATGGACAATCCAAAGCTTGAACAGTTTACCAATTCTTGGCGCTTCGGAAATGGAATGTTTGCATTGGTTCTATCTTTTGGGCTTCTATTTAGCGGACTGCAGAGCCGCAAAGCAAGGTCATGGCGTTATGGGACAGGTTGGCTACGAGGTCTCATCGCGGATTATGGAGTCCCTTTGATGGTTCTTGTTTGGACTGGAGTATCATATATACCAAGAGGCCATGTTCCAGATGGAATTCCCAGGCGCCTCTTTAGCCCAAATCCATGGTCACCTGGTGCTTATGACAACTGGACAGTAATTAAGGAAATGTTGGATGTGCCATTGCTGTACATTATCGGTGCATTTATTCCAGCCACAATGATTGCTGTCCTTTACTATTTTGACCACAGTGTGGCATCTCAACTTGCTCAGCAAAAGGAATTCAACTTGAGAAAGCCATCTTCTTTCCATTATGATCTGCTTCTTTTGGGCTTCTTGGTTATCATATGTGGTCTTATTGGTATACCTCCTTCAAATGGTGTTATTCCTCAATCTCCAATGCACACAAAAAGCTTAGCTACTTTGAAACACCAGTTGGTCCGTGATAGATTGGTGAAGACAGCTAAGAAAAGCATTAAAC

Fln Alignment:

sp_v1.1_unigene11160___NDLKGRLLCYKQDWTGGFNAGFRILAPTTYIFFASAIPVISFGEQL--DRNGILTAVQTLSSTAICGIIHSIFGGQPLLILGVAEPTVLMYTFMYNFAKDREDLGPKLFLAWTGWVCVWTAFLLVLLAILGACSIINRFTRVAGELFGMLIAMLFVQQAIRGAVDEFRVPKMDNPKLEQFTNSWRFGNGMFALVXXXXXXXXXXQSRKARSWRYGTGWLRGLIADYGVPLMVLVWTGVSYIPRGHVPDGIPRRLFSPNPWSPGAYDNWTVIKEMLDVPLLYIIGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSFHYDLLLLGFLVIICGLIGIPPSNGVIPQSPMHTKSLATLKHQLVRDRLVKTAKKSIK
B8LRN9_______________NDIRGRLPCYKQDWIGGFTAGFRILAPTAYIFFASALPVIAFGEQLGRDTDGTLSAVQTLASTALCGIIHSILGGQPLLILGVAEPTVLMYTYMFNFAKNRSDLGQRLFLAWAGWACVWTSLLLCLLAIFGACSIISRFTRVAGELFGMLIAVLFMQEAIKGVVGEFHVPKQGNPENEVYQFPWLFANGLFGLLLSFGLLITALKSRRARAWRYGTGWLRGFIADYGVPVMILVWSAVSYSASDKVPTGVPRRLFSPNPWAPGASSNWTIIRDMLNVPPMYILAALIPAIMIAGLYFFDHSVASQMAQQKDFNLKNPSAYHYDMLLLGFMVLLCGLLGLPPSNGVLPQSPMHTKSLAVLKRQMIRKKMVESAKKSIE

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
843		71	28		1.0
845	28			71	1.0
894		28		71	1.0
896	85		14		0.993533
899	71		14		0.984337
900	71			28	1.0
904		28		71	1.0
905			28	71	1.0
919	33	66			1.0
921	33		66		1.0
924		66		33	1.0
928	66		33		1.0
946	62		37		1.0
967		50		50	1.0
976		50		50	1.0
985		50		50	1.0
1034		42		57	1.0
1066		50		33	1.0
1078		50		50	1.0
1081	50		50		1.0
1091	60			40	1.0
1093			40	60	1.0
1096		40		60	1.0
1118		40		60	1.0
1121	40			60	1.0
1124		40		60	1.0
1127	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain