SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11132

Length: 979 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11132

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AtALMT9 (aluminum-activated malate transporter 9); anion channel	-	-	8.0e-24	29%
FL-Next	Isoform 3 of Aluminum-activated malate transporter 14 OS=Arabidopsis thaliana GN=ALMT14	-	-	0.0	29%
Blast2go	uncharacterized protein family upf0005 containing expressed	-	-	5.1264e-25	53%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	5.1264e-25	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LS22-3

Fln msg: your sequence is shorter than subject: 304 - 496

Fln protein: VGPSSRRFRFRYPWTQYLKIGGMLRHCAYSVVALHGCLRSEIQTPPSVRNVLRRQCTKISTEAVKVLEELAESVKEMRRCGPLEPMMKRIDTAVKELHSVLRAEPELFIDSKKWSIVEEIPEKDEAPEEELTLEDETTSNTEPEAQESRAGVELMKHRKTRAVAGSSDLRISCSMDSSGQYKSSKDKPSPERCPRHVSWHGPETIPTTPRRENTFPALGRHYSSRKFNRTNQLQFAEAFPLATFASLMVEFTARLKHLAVGVDELGKLARFKPATEGGINRRGLIYTRSKDFVSTHAYTHAAE*

Protein Length: 305

Fln nts: CGTCGGACCCTCGTCACGCAGGTTTCGCTTCAGATACCCTTGGACTCAGTACCTTAAAATTGGCGGCATGCTCAGACATTGTGCTTACTCAGTAGTTGCATTACATGGCTGTCTACGCTCTGAGATACAGACCCCGCCTTCTGTCCGAAATGTATTGAGGAGGCAATGCACAAAAATCAGCACTGAAGCAGTGAAGGTTCTGGAAGAACTGGCCGAGAGCGTCAAGGAAATGAGGAGATGTGGACCTCTGGAGCCGATGATGAAACGAATTGATACAGCGGTAAAGGAGCTTCACTCGGTTCTTCGCGCCGAGCCCGAGCTCTTCATCGACTCTAAAAAATGGTCCATAGTCGAAGAAATCCCGGAAAAAGATGAAGCTCCTGAAGAAGAATTAACCTTAGAAGATGAGACGACCTCCAATACTGAACCCGAAGCACAGGAATCTCGGGCTGGAGTAGAATTAATGAAGCATAGGAAAACTAGAGCAGTTGCAGGAAGCTCAGACTTGAGGATATCTTGCTCCATGGATTCTTCGGGACAATATAAATCGAGCAAGGATAAGCCCTCCCCAGAAAGATGTCCGAGACATGTATCCTGGCACGGTCCAGAAACCATACCCACAACACCAAGACGAGAAAATACATTTCCAGCCTTAGGCCGCCATTATTCCTCTAGGAAGTTTAACAGAACAAATCAGCTTCAATTCGCAGAGGCGTTTCCTCTTGCTACGTTTGCATCGCTGATGGTAGAATTTACAGCGAGATTAAAGCACCTTGCAGTGGGAGTTGATGAGCTAGGGAAGCTTGCTAGGTTCAAACCTGCAACAGAAGGAGGGATCAATCGGCGTGGGCTGATTTATACAAGATCCAAGGACTTTGTGTCCACTCATGCTTATACTCACGCAGCTGAGTAG___TGTGTGTGTATATTTTCAAGAAGTGTAATGGTTAAGAGATGTTGTGCATTTGAATTCCGAaAGAGT

Fln Alignment:

sp_v1.1_unigene11132___PSSRRFRFRYPWTQYLKIGGMLRHCAYSVVALHGCLRSEIQTPPSVRNVLRRQCTKISTEAVKVLEELAESVKEMRRCGPLEPMMKRIDTAVKELHSVLRAEPELFIDSKKWSIVXXXXXXXXXXXXXXXXXXXXXXXXXPEAQESRAGVELMKHRKTRAVAGSSDLRISCSMDSSGQYKSSKDKPSPERCPRHVSWHGPETIPTTPRRENTFPALGRHYSSRKFNR--------TNQLQFAEAFPLATFASLMVEFTARLKHLAVGVDELGKLARFK
Q9LS22-3_____________PRHTRHCHRFPWKHYVKVGSVLRQFGYTVVALHGCLKTEIQTPRPLRGLFKDPCVRLAGEICKVLSELAASIRNRRHCSP-EILSDSLQVALQDLNTAIKSQPKLFLGSSQ----------------------------NGNVSQGNSG----RHNPNVAVS----QHINKDTNEAASYQNT-GTPRGERMSR----FGPNVSFSRLRADTLERRSAAATNERKILRQQLSRIVVLTSLEFSEALPFAAFASLLVEMVARLDNVIEEVEELGTIACFK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
562	33		33	33	0.997753
565			33	66	0.997452
587		12		87	0.992554
590	87	12			0.992554
594	50			50	1.0
625		12	87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain