SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11111

Length: 1029 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11111

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-expansin 3 precursor, putative	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	beta-expansin 3	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	plant-type cell wall loosening	GO:0009828	Biological Process	81%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	81%
Blast2go	sexual reproduction	GO:0019953	Biological Process	81%
Blast2go	syncytium formation	GO:0006949	Biological Process	81%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	81%
Blast2go	extracellular region	GO:0005576	Cellular Component	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9L6

Fln msg:

Fln protein: MKRFRCISPCKSSSWLVIVAVSVFLCVKVSWALEEQELEWHPATATWYGSPDGDGSDGGACGYGNLVDVKPYRKRVGAVSPVLFKGGEGCGACYKVKCTDERMCAQRAVTFVVTDECPGGPCAFGKTHFDLSGSVFGRMAIADKTTTILNSGEIPVLYRRTLCEFPRKNVTFHVNEGSTAYWFSILIEYEDGDGDVGAIHLREADSDEWMAMQHSWGANWCLLRGPMKAPFSLRVTTLSSNRTLSARNIIPQNWYPTASYRSRLNFDR*

Protein Length: 270

Fln nts: ATGGGGATTGCAATAAACGTTAAAGCGGTTGACAGTTGATTTCGATTGGACATCAATCATTTATCAATTGTTCCCCACTGGGCCAGTCTCTGGTTGCTGGCCAGTCTCTGGTTGCTGGGTTCTTCAATAAATCTGCATTCCTCCTTTTGGTCTTTAACCAGTTTCTGATCATCACTTTCTCCGGAGAAAAGG_-_ATGAAGAGATTCAGGTGTATATCTCCGTGCAAGTCCAGTTCCTGGCTTGTTATAGTAGCTGTGAGTGTGTTTTTGTGTGTGAAGGTGAGTTGGGCTCTGGAAGAACAAGAGCTGGAATGGCACCCTGCTACTGCTACCTGGTATGGTAGTCCAGATGGAGATGGAAGTGATGGTGGTGCATGTGGATATGGCAACCTTGTGGATGTGAAGCCATACAGAAAACGGGTGGGTGCTGTAAGTCCAGTTTTGTTCAAAGGTGGAGAAGGCTGCGGAGCATGCTACAAGGTGAAATGCACGGACGAGAGGATGTGTGCGCAAAGAGCAGTGACCTTTGTGGTGACTGACGAGTGCCCGGGAGGACCCTGTGCATTTGGTAAAACGCATTTTGATCTGAGTGGATCTGTTTTTGGGCGAATGGCGATTGCTGACAAAACCACGACGATTCTCAACAGTGGAGAGATCCCAGTTCTATATAGACGCACACTCTGCGAGTTTCCCAGGAAGAACGTAACTTTCCATGTGAACGAAGGGTCTACAGCGTACTGGTTCTCCATTCTAATCGAGTATGAAGACGGAGATGGGGATGTGGGAGCCATCCATTTAAGAGAGGCGGATTCAGATGAGTGGATGGCAATGCAGCATTCATGGGGCGCCAACTGGTGTCTGTTACGAGGGCCAATGAAGGCGCCATTCTCTCTGCGGGTCACCACACTCTCCAGCAATCGAACATTGTCTGCCAGAAATATCATTCCTCAGAACTGGTACCCCACCGCCAGTTACAGGTCGCGCCTCAACTTTGACCGCTGA___AATTTAATGTTGCAGTTGAAGCTCTCTTCC

Fln Alignment:

sp_v1.1_unigene11111___VAVSVFLCVKVSWALEEQEL-----EWHPATATWXXXXXXXXXXXXXXXXXNLVDVKPYRKRVGAVSPVLFKGGEGCGACYKVKCTDERMCAQRAVTFVVTDECPGGPCAFGK-THFDLSGSVFGRMAIADKTTTILNSGEIPVLYRRTLCEFPRKNVTFHVNEGSTAYWFSILIEYEDGDGDVGAIHLREADSDEWMAMQHSWGANWCLLRG-PMKAPFSLRVTTLSSNRTLSARNIIPQNWYPTASYRSRLNFD
D5A9L6_______________VLLLLFSCKEAAVALDHTELRGNAMEWRSAIATWYGSPDGDGSDGGACGYGTLVDQKPLRATVGAVSPVLFHGGEGCGACYKVKCMEKGLCSQKPVTVVITDVCGGGYSAFGGGTHFDLSGAAFGRMATHGKTPALLNSGELPVLYRRTFCKYPGKNISFHVTEGSTVYWFSILIEYEDGDGDVGAVHLKQVDSNAWMKMRHIWGVNWFLPGGAPLKAPFSVRVTTLTSKRTLSAMNVIPEHWYPNATYSARVKFD

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
278	20		80		0.999996
340	10			90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain