SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11105

Length: 1475 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11105

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Non-specific lipid-transfer protein n=1 Tax=Picea sitchensis RepID=A9NQ72_PICSI	-	-	81%
FL-Next	sp=Non-specific lipid-transfer protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	lipid binding	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	lipid transport	GO:0006869	Biological Process	68%
Blast2go	lipid binding	GO:0008289	Molecular Function	68%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ72

Fln msg:

Fln protein: MAKTLCSTGFWVFLAASLVGSALADLQGDQKACTDKLTSLTNCFAYVQGNQKSPSTDCCTNLKNVYQTAPKCLCILVKDSTSPSLGVSINQTLALGLPAACKVNANISECPALLNIAPNSPDAKVFEAANKTSPAPHSSDGSSGSSSTAATTDLSKSMSLNLKPKLSLSALAVLLPLGFLVLSKFGVDFRLSMY*

Protein Length: 196

Fln nts: AGAGGGTGGATTAATGTAGGAGACTTCCTATGCCTAACAAATTAAATTGCTCTCCACCCTCCTACCTGCCACGGATTCGTATACTAGGTACACCTTAATGAGCACAGAGCCTTGTGTATATATTTCCATCTACCCACCTTGCTGGTTACCTGGAACGAGGGATTGATTCCAGAGTTAGAGTGGTTTTGAAGTCTGCAAATTGACACGGATTGATTCTGGAGTTGGAGAGGTTTTGAAATCTGCACTGTAATTCAGAG_-_ATGGCTAAGACATTATGCTCGACTGGTTTTTGGGTTTTTTTGGCCGCGTCCTTGGTGGGATCTGCTCTGGCGGATTTGCAGGGCGACCAGAAGGCGTGCACAGATAAGCTTACTAGTTTGACTAATTGTTTTGCTTATGTACAGGGCAACCAGAAAAGCCCCAGCACAGACTGTTGCACTAATCTGAAGAATGTATACCAGACTGCGCCCAAGTGTTTGTGTATTTTGGTGAAGGATAGTACTAGCCCTTCACTTGGTGTATCTATTAATCAGACCCTTGCTTTGGGGTTACCTGCTGCCTGCAAAGTGAATGCAAATATCTCTGAGTGTCCAGCGCTTCTCAATATTGCCCCAAATTCACCTGATGCCAAAGTTTTTGAAGCTGCCAATAAGACCTCCCCTGCTCCGCATTCCTCTGATGGATCTTCAGGGTCTTCTTCAACTGCGGCAACCACTGATTTAAGCAAGAGCATGAGTTTGAACTTAAAGCCTAAGCTTAGTCTGAGCGCCTTGGCGGTCCTGTTGCCACTTGGGTTTTTGGTTCTTTCAAAGTTTGGAGTCGATTTTCGTTTAAGTATGTATTAG___GACTTTGGATTTGATTTTCGCTTTAATTCTGAGAAGATGGATTCAAGGGATGGGCGACCGAGTAGGTTATTTTCTCGGATTTTTGTATTTGATGATGCAACCGAAATTTTCATCGATGGCGATCTTGACATTTAAGTGCCCTAATCAGCTTTCTTGAAAATTTGTATTCACAAATAATGTTATCTGCTAGGTATCTGTGAAAATCTTATTGTCCTGTGCTAACATTGAAATCGATCGTTTCTTATGGGCATCTTACCTTTCCTGCAAAGGGTTTTTGATATTCTTAGAGGTTGTTGTGGTGATTAGACTACATGGTGAGTAATATATGCAAATGACTAGTCATCCTGATGTTACGTTTTAATCGACTGAACTTTTTCCCCAGCGCTCTTTAGGTTTTGTTGGAAAAAAGTTCCTTATATTTTCGATTGGCAGTTCAAAATTCAGATGCTCAGTCACCTTACGAACATATTTATATAACATTTATTCAATCGGTAGGAAAATTTCAGCAATGTGAAATTGATATTTCCTGGTCACTTTTGTAATTTCATGTCAGCTTTAGATCCGAACAAAAGTGTAGCGGGTTGGTTGGGCCATTTCCGATCATGTCTATATTGTGTTTCTATTTTGTTGCCA

Fln Alignment:

sp_v1.1_unigene11105___MAKTLCSTGFWVFLAASLVGSALADLQGDQKACTDKLTSLTNCFAYVQGNQKSPSTDCCTNLKNVYQTAPKCLCILVKDSTSPSLGVSINQTLALGLPAACKVNANISECPALLNIAPNSPDAKVFEAAN
A9NQ72_______________MAKTLCFTGFWVFVAACLVGSALADLEADQKECSSQLTSMTKCFSYVQGTDKSPSTDCCANLKNVYQTAPKCLCILVKDSTSPALGLSINQTLALGLPSACKVNANISACPALLNLSPNSPDAKIFGVAN

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1130	16			83	0.994512
1141			60	40	1.0
1171		40		60	1.0
1174	83		16		0.994512
1175			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain