SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11089

Length: 1834 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11089

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9T6N4_RICCO	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	dynamin family protein	-	-	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytokinesis	GO:0000910	Biological Process	0.0	63%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQI9

Fln msg: No stop codon before M and low homology subject,

Fln protein: MTATTGTGNSGRDLSVFIQRKQEADGRKRMSCNGCRVLRKGCSDTCILRPCLQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPDHQRPALFQSLLYEACGRTVNPVNGAVGLLWNGNWQLCQAAVETVLKGGTLRPPQSSSVIPTCSTRPSLMNSFSANFRVNSNVNNINSSSSRNSACICSFVVGSAFRCCL*

Protein Length: 197

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACACTATTATTTTCGTTCTGCAAAATTTTGCACTTTC_-_ATGACTGCGACAACAGGTACCGGCAACTCAGGCAGAGACCTCAGTGTTTTTATACAAAGGAAGCAGGAGGCGGACGGTAGGAAAAGGATGAGCTGCAACGGTTGTCGAGTTCTGCGTAAAGGTTGCAGTGATACCTGCATTCTTCGGCCTTGTCTGCAATGGATCGAATCACCTGAAGCCCAGGGACACGCCACTGTATTTGTTGCGAAGTTCTTTGGCCGTGCGGGCCTGATGTCGTTCATTAGCGCTGTGCCGGATCATCAGAGGCCCGCTCTATTCCAGTCTCTGCTGTACGAAGCCTGCGGGAGAACAGTGAATCCTGTAAACGGAGCTGTGGGACTGCTATGGAACGGAAACTGGCAACTCTGTCAGGCAGCGGTCGAGACGGTCCTGAAGGGAGGAACTCTTCGCCCGCCGCAGTCATCGTCTGTGATTCCGACGTGTTCCACCCGTCCTTCATTAATGAACAGTTTTTCGGCAAATTTCCGTGTCAACAGCAACGTCAATAACATTAACAGCAGCAGCAGCAGGAATAGCGCGTGCATCTGCTCGTTCGTGGTTGGCTCCGCTTTTAGATGCTGCTTGTGATCGCCTTGCTTTTGTGCTCAGAAGCCTATTTGAACTGGCAATTGAGCGCAAAAGAATTGAAGACTCTTCTGATTGTGAGAGAAGCACTGCTGCTGGGGTTGGAGGCTATATTGCTTTTCATGCTGCTTTGAGGCGGGCCTATGACCAGTTCATCCAAAATTTGACAAAGAAATGCAAGGAGCTTGTGAGGCATCATTTGGACTCGGTGACAAGTCCTTATTCTCAGGTTTATAGGCCAGAATACAACATGGGAAATGGATTTTTTGGATTTGGAGCATCAACCACAGGATACAGGTTCAATCGTTCATCTGCTCCAATGTTTATGGACCTTTCTGAAGATCGAGGATGTCCCCAGGAAGAGGGATTGGATGAGGAACATGAGAATGTTGCTCCGCCAGGGCACCTGCAAGCAACACCAAACAGAGGGTCTGATTCAAGAGATCCACTTAGAGAAAGTCAAATGACTGTCCCTGAGACACCTTCACCGGATCAACCAAGCAGTGAGATCGGTGCAGCAAAGAAAAAGGAATATGGAATTGCCAGTGGGCGTATTGGAGCTGAATTGGGAGGGCGGAAGAGGCAAATGCCATTGGTATCTAATTCTCGTGTAGGTCAAAACAAGGAGCCTAAAAATTCCAATTCGAATGTGTTATTTGGAAACAATAGCTCTTCATCAAGCATACACTGAAGTTTGTTCTTTAGCTGCCCAGCATTTTGGGAGTATCCGTGAAGCCCTCATAGAACAAAGTGTGCCATCCGCTCTGAATGCTGGCTTCCTGACTCCTTGTCGAGACAAATTAGTAGTGGCACTGGGAGTGGAGCTATTTGCTGTGACGGATGAAACCTTTATGGATATGTTTGTTGCACCTGGTGCTGTGGACCTTCTTAGGAACGAACGCCAAGTCACGCAAAAGCGTCTGAAGACTTTGCAATCTTGCTTGAATGAATTTAGGAATCTTGCTCGTGCACTTTGAGTTGGATCTGTATGTCAAATCTATCACTATGCATACCACATCCAGTGGTCATGGCTAGCTTTGCGGACTTCTTTGCATGACCTGAGTCTTATCCTGTGGTTCGATCAACAAGGCATGGGCTTAGTTGTTTGAACAGAGTTTCTTGTTCATTCAAGCAATTTGATTGCCAATGAATCAAATCACTGATGTTGAAAGGATCAAGCATATCATT

Fln Alignment:

sp_v1.1_unigene11089___CNGCRVLRKGCSDTCILRPCLQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPDHQRPALFQSLLYEACGRTVNPVNGAVGLL
B8LQI9_______________CAGCKIQRKKCSQNCVLAPYF-----PQGKPHKFLLVHKVFGNGHVVKLLQDLPAEQRGDAVSSMVYEASQRFRDPVHGCAGVI

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
928	77	22			0.999999
932		22		77	0.999999
1052	66			33	1.0
1103			14	85	0.993533
1104	85		14		0.993533
1133	87		12		0.992554
1134		87		12	0.992554
1136			12	87	0.992554
1138		87	12		0.992554
1142			87	12	0.992554
1143			87	12	0.992554
1144	87		12		0.992554
1145			12	87	0.992554
1147	87			12	0.992554
1148	75		25		1.0
1149		87		12	0.992554
1152	87	12			0.992554
1153			87	12	0.992554
1396	66		33		0.997452
1398	66		33		0.997452
1441	25			75	0.996473
1444			25	75	0.996473
1445		75	25		0.996473
1488			25	75	0.996473
1629		25		75	0.996473
1633	60	20			0.99255
1635		20		80	0.995493
1636		20		80	0.995493
1638			80	20	0.995493
1639	80	20			0.995493
1640	20	20		60	0.99255
1643		20	80		0.995493
1644	20		20	60	0.99255
1645	80	20			0.995493
1651	80	20			0.995493
1655	20			80	0.995493
1680		14	85		0.993533
1684	83		16		0.994512
1687	16		83		0.994512
1690	83		16		0.994512
1694			16	83	0.994512
1696		16	83		0.994512
1698			83	16	0.994512
1699		16	83		0.994512
1715		83		16	0.994512
1753		75		25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
577	591	CAG CAG CAG CAG CAG	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain