SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11080

Length: 801 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene11080 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peroxiredoxin, putative n=1 Tax=Ricinus communis RepID=B9SRG0_RICCO	-	-	2.0e-30	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	protein	-	-	1.68877e-30	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	1.68877e-30	72%
Blast2go	antioxidant activity	GO:0016209	Molecular Function	1.68877e-30	72%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	1.68877e-30	72%
Blast2go	protein binding	GO:0005515	Molecular Function	1.68877e-30	72%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	1.68877e-30	72%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	1.68877e-30	72%
Blast2go	thylakoid	GO:0009579	Cellular Component	1.68877e-30	72%

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
529	25	75			1.0
530	75		25		1.0
531		75	25		1.0
533	12	25			1.0
535		25		75	1.0
540			25	75	1.0
544	16	83			0.994512
549	16	66		16	0.988813
588		16	83		0.994512
707	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain