SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11048

Length: 1408 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene11048 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TraB protein-related	-	-	52%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	56%
Blast2go	at5g52030 msg15_11	-	-	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pheromone shutdown, TraB	IPR002816	-	0.0	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9SWK6

Fln msg:

Fln protein: MPLVGPSLSTASFTSSTLPPFVASPSPLFIRRRRTGALTRINVSIEPPPVGYDFRAETRQETAAIIRELYPDLSDLVQEGDMVVIKRPLDYVERRSDGYVEPELIFLFGTSHVSGASAANVERVLKVVRPENVVVELCRSRAGIMYSGEPAKYVKGQPAENRETNLFSIGGVNFLSAMGRSLNLGGQSALALRLLLAGFSQKISSSIGTPIGDEFRAARKASEEIGAQIVLGDRPIEITLERAWKALGWTEQLGFVNTLLQGTFFRPLDVSKGNLEKLKTDDSMSTMFKELSKFYPSLLQPLIHERDVYLAWSLKRSKAVNGSKKVVGIIGRGHMCGVVHALKHDHNHLRFRDLVGGRRPNNDNMKDWMRSLVSGFIRDTLITIIVLWFVEHQNIRFGL*

Protein Length: 401

Fln nts: TTCTCCGTATAAATAATGGCGATGGTGATGCAACGAAGGGTGGAAGTGTCGAGGAGGTGAACGAGGCCGTCGAGAGGAAAACAATGCATTGCGTAATCTTTCGCAGGATTCACG_-_ATGCCTCTGGTTGGTCCCTCCCTCTCGACGGCCTCGTTCACCTCCTCGACACTTCCACCCTTCGTTGCATCACCATCGCCATTATTTATACGGAGAAGAAGAACAGGAGCACTTACTCGAATTAATGTATCAATTGAGCCCCCGCCTGTGGGCTACGACTTTCGAGCAGAAACTCGCCAGGAGACTGCGGCCATTATTCGAGAATTGTATCCCGACCTTTCAGATTTGGTACAGGAGGGCGATATGGTAGTAATAAAGAGGCCTCTTGATTACGTAGAGCGTCGGAGCGATGGGTATGTTGAGCCTGAGCTCATATTTTTGTTTGGGACGTCCCACGTGTCCGGTGCCTCAGCTGCCAACGTGGAGCGTGTTCTCAAAGTGGTGCGCCCTGAGAATGTGGTCGTGGAGCTCTGCAGAAGCAGAGCTGGGATTATGTACTCTGGAGAACCAGCTAAATATGTAAAAGGCCAACCTGCAGAGAATCGGGAAACAAATCTTTTCTCTATAGGTGGGGTAAACTTTTTAAGTGCCATGGGCCGCAGCTTGAATCTGGGTGGGCAATCTGCACTGGCGCTGCGGCTTCTTTTGGCAGGTTTCTCACAAAAGATTTCTTCCTCTATTGGCACACCTATTGGCGATGAGTTTCGTGCTGCTCGTAAAGCTTCAGAGGAAATAGGAGCTCAAATAGTGTTGGGGGACCGTCCCATTGAAATCACACTTGAAAGGGCTTGGAAAGCTCTTGGATGGACTGAACAACTAGGATTCGTCAACACACTTCTCCAAGGGACTTTCTTTCGTCCTCTTGATGTATCAAAAGGAAATCTTGAGAAGTTGAAGACAGATGATTCGATGTCAACGATGTTCAAAGAGTTAAGCAAGTTCTACCCATCATTACTACAACCTCTGATCCATGAGAGAGACGTGTATCTTGCATGGTCATTAAAGCGAAGTAAAGCAGTTAATGGTAGTAAGAAGGTAGTTGGAATCATCGGAAGGGGTCACATGTGTGGTGTAGTGCATGCCTTGAAGCATGATCACAATCACTTGCGCTTTCGTGATCTCGTAGGTGGAAGAAGGCCAAACAATGACAATATGAAGGATTGGATGAGATCATTAGTTAGTGGTTTCATTAGAGACACACTTATCACTATTATTGTTTTATGGTTTGTGGAGCATCAAAATATTAGATTTGGACTTTAA___ACATTGTTCCAATTTTTAATGTATGAAATTTGTTGAGAAATCTTCTTATTATGCATTTAATAAATCAAAATCTTACTAAGGTTATTTGAGACAC

Fln Alignment:

sp_v1.1_unigene11048___TRINVS--IEPPPVGYDFRAETRQETAAIIRELYPDLSDLVQEGDMVVIKRPLDYVERRSDGYVEPELIFLFGTSHVSGASAANVERVLKVVRPENVVVELCRSR---AGIMYSGEPAKYVKGQPAENRETNLFSIGGVNFLSAMGRSLNLGGQSALALRLLLAGFSQKISSSIGTPIGDEFRAARKASEEIGAQIVLGDRPIEITLERAWKALGWTEQLGFVNTLLQGTFFRPLDVSKGNLEKLKTDDSMSTMFKELSKFYPSLLQPLIHERDVYLAWSLKRSKAVNGSKKVVGIIGRGHMCGVVHALKHDHNHLRFRDLVGGRRPNNDNMK-DWMRSLVSGFIRDTLITIIVLW
A9SWK6_______________TRVDGSQKVRPPPSDYDFRAETSDGTQEMVQRLYPELMDLVEDGTLVIVKRPPDYVERRSDGYVEPEVVYIVGTAHMSKLSANQVTRVINAVQPENVVIELCRSRHRRAGIMYDEAQTSDVK-----QGSKNLMSMSGDNFGSAVGRSLKLGGRSALALRLLLAGVSKRLSASAGVATGEEFRAARKAAEALGAQIVLGDRPIEITLQRAWRSLKWDERLRFGATLVQGMSDKNLNVSEESLQMLKSDDALSAMFGELSSRFPSLMQPLIHERDMYLAWSLKRSKAVNGCKRVVGVVGKGHLRGIVHALIHDQENLRFKDLVGSRGIGTENSKGEKLRKFATNLAIETVIGLLTWW

SNPs (tot: 90)

Position	A %	C %	G %	T %	Probability
428		87		12	0.999964
429			11	88	0.999952
430	11			88	0.999952
436	88	11			0.999952
437	11			88	0.999952
438	11	82		5	0.999919
440	5		11	82	0.999919
442		11	88		0.999952
445	88		11		0.999952
446	11		5	82	0.999919
458	13			86	0.999973
525		18	81		0.999994
526	18			81	0.999994
527		18		81	0.999994
538	88			11	0.923564
540	11			88	0.923564
544			11	88	0.923564
548		11		88	0.923564
550	11	88			0.923564
552			11	88	0.923564
553		88	11		0.923564
556	88	11			0.923564
584		12		87	0.992554
585	12			87	0.992554
586			12	87	0.992554
588	87	12			0.992554
590	12			87	0.992554
593			83	16	0.994512
597	16		83		0.994512
598		16		83	0.994512
599		83	16		0.994512
610	80			20	0.995493
611			20	80	0.995493
612	20			80	0.995493
616		25	75		0.996473
617	25	75			0.996473
618			25	75	0.996473
621	25			75	0.996473
623			25	75	0.996473
624			25	75	0.996473
627	25	75			0.996473
633	75	25			0.996473
681			75	25	0.996473
684	75		25		0.996473
687	75	25			0.996473
789	33			66	1.0
915		55		44	1.0
949			44	55	1.0
966	42	57			1.0
972	83	16			0.994512
973	83	16			0.994512
975		83		16	0.994512
993		50		50	1.0
999	50		50		1.0
1113	40	60			1.0
1134	60		40		1.0
1173	25		75		1.0
1175		12		87	0.992554
1176	12			87	0.992554
1177		87		12	0.992554
1182	87		12		0.992554
1184		12	87		0.992554
1185	12			87	0.992554
1190	12	87			0.992554
1191	12			87	0.992554
1193			12	87	0.992554
1197	12			87	0.992554
1199			12	87	0.992554
1200	12			87	0.992554
1202			12	87	0.992554
1305		25		75	1.0
1309	87	12			0.992554
1310	87	12			0.992554
1311	87	12			0.992554
1312	12	12	75		0.975346
1317		85		14	0.993533
1321	85		14		0.993533
1325	85	14			0.993533
1326		28		71	1.0
1327	14	14		71	0.984337
1328		16	66		0.988813
1329		50		50	1.0
1330	16	33		50	1.0
1331	16	16		66	0.988813
1332	50			50	1.0
1333		50	25	25	0.995533
1334		66	33		0.997452
1338	33	33		33	0.997753
1340		33	66		0.997452
1342		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain