SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11047

Length: 1175 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11047

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative 97B2-like cytochrome P450 n=1 Tax=Ginkgo biloba RepID=Q6J4G9_GINBI	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Blast2go	cytochrome p450	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	88%
Blast2go	heme binding	GO:0020037	Molecular Function	88%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	88%
Blast2go	aromatase activity	GO:0070330	Molecular Function	88%
Blast2go	oxygen binding	GO:0019825	Molecular Function	88%
Blast2go	membrane	GO:0016020	Cellular Component	88%
Blast2go	chloroplast	GO:0009507	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Blast2go	Cytochrome P450	IPR001128	-	88%
Blast2go	Cytochrome P450, E-class, group I	IPR002401	-	88%
Blast2go	Cytochrome P450, conserved site	IPR017972	-	88%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQC0

Fln msg: No stop codon before M and low homology subject,

Fln protein: MKGEDVDNRQLRDDLMTMLIAGHETTAAVLTWAVFMLAQNPDKLVKAQAEVDTVLAQRNPTYECIKKLQYIRLIIAEALRLYPQPPLLIRRALQPDTLPGGYRGDKDGYPIPQGTDIFISVYNLHRSPYFWDQPDNFEPERFLLPKDSKGIEGWAGFDPYKGQGALYPNEIISDFAFLPFGGGPRKCVGDQFALMESTVGLAMLLQKFDIELRDPPESTQIVTGATIHTKSGLWCKIKRRKT*

Protein Length: 244

Fln nts: CTAAAGTGAAAGATGCAAGTTTGCTCAGATTTCTAGTTGAT_-_ATGAAGGGAGAAGATGTTGACAATAGACAGCTTAGAGATGATCTAATGACAATGTTAATTGCTGGGCATGAAACTACAGCAGCAGTACTTACATGGGCTGTGTTTATGCTTGCACAAAATCCAGACAAATTGGTAAAGGCTCAAGCTGAAGTCGACACGGTACTTGCCCAAAGAAATCCAACTTATGAATGTATTAAAAAACTGCAGTATATTCGGCTAATAATAGCAGAGGCACTTCGACTTTACCCTCAACCACCTTTGCTGATTAGGAGAGCATTACAGCCAGATACTTTACCTGGTGGGTATAGAGGGGACAAGGATGGGTATCCGATACCACAGGGAACTGACATCTTTATTTCGGTTTACAACCTTCATAGATCTCCTTATTTCTGGGATCAACCCGATAATTTTGAACCGGAAAGATTTCTTCTACCGAAGGATAGCAAAGGCATTGAAGGCTGGGCCGGTTTTGATCCTTACAAAGGGCAAGGAGCATTATACCCAAATGAGATCATATCAGATTTTGCATTTCTCCCCTTTGGCGGTGGACCTCGCAAGTGTGTGGGAGATCAATTTGCACTTATGGAATCAACTGTTGGCCTGGCTATGCTCTTGCAGAAATTTGATATAGAGCTGAGGGATCCTCCAGAATCAACTCAGATAGTTACGGGTGCAACAATTCATACAAAAAGTGGTTTGTGGTGTAAAATAAAAAGAAGGAAAACATAATGAATGGTGACTATAACCTGATGAATATAATCATTGTCTATTTGGCTTTTGCTTTTGCGAAAACTCAATTCAAAGTTTCTGCCTTTGTTTAGGTCAAATGAAATTATCCAGTCAAGATATGATGAACTTTATGAATATTAACAGCAATTGTAACTACTGAAGTAACTGCTTCTGGTTTACCACAGATATCGTACATATTATCATTTGATAATAACTTGTATATCTAAAAACGGGGACATTCTTAGATTCTATACAATCCCCATTAGCCCATGCCTCGAGTAAAGCGCTCTATATTTGTTTATTGTAAAACAAGATCTACCGGCAAGAAATCACTGTATTCTATTAGCATCCTATGAAATGATATTCTATAAATAATTTCTAACATCGACCTATTTTGCTCCTGGA

Fln Alignment:

sp_v1.1_unigene11047___QLRDDLMTMLIAGHETTAAVLTWAVFMLAQNPDKLVKAQAEVDTVLAQRNPTYECIKKLQYIRLIIAEALRLYPQPPLLIRRALQPDTLPGGYRGDKDG-YPIPQGTDIFISVYNLHRSPYFWDQPDN-FEPERFLLPKDSKGIEGWAGFDPYKGQGALYPNEIISDFAFLPFGGGPRKCVGDQFALMESTVGLAMLLQKFDIEL
A9NQC0_______________EIMNECKTFFFAGHDTTSNLLTWAVFLLSINPEWQEILRKEVISVCGTDIPDADMLSKMKSMTMVLNETLRLYPPASKIIRKA---------YKAIKLGQFSLPKGAVLSFSILAMHHNEKFWGLDANLFKPERF-----AAGV----------SKAAIHPN------AFFPFSLGPRNCVGQNFAMLEAKTVLAMILQRLSFSL

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
380	75		25		0.996473
444		75		25	0.996473
547	87	12			0.992554
548	87		12		0.992554
551	87			12	0.992554
554		12		87	0.992554
556	87			12	0.992554
558	87		12		0.992554
559			12	87	0.992554
561	87			12	0.992554
563	87			12	0.992554
564		12		87	0.992554
565	14			85	0.993533
566		14		85	0.993533
568		14	85		0.993533
569	14	85			0.993533
582		36		63	1.0
738		25		75	0.996473
924	81		18		0.999994
950	81	18			0.999994
1010		25		75	1.0
1061			33	66	1.0
1068	16		83		0.994512
1092	20		80		0.995493
1138		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain