SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11027

Length: 308 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene11027
ATAAGGATCTCGTTCCTCCAGAAGGAAATGATGTGCGGAATGCTCAAATGTGTCCATTCTGCCTGATGAATGCTAAAAATCTTGCTTTTGACTGTGGTCATCGGACCTGTTATGACTGTGGACAAAACATCGCTACATGCCCTATATGTTACAGTCAAATCACAACCAGGATAAAACTGTATTAAAGTTGATGCAGGTTTGACAGAAGATAAACATTTATTGTGAGTAGACCATCTGAAATAGTTGAATCAGTGCTGGATTGGCATGGACCTATGTTTTGCCGAGTGAATTTGTGCAGCAACTGAAAT

Ace file of the UniGene sp_v1.1_unigene11027

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	copine, putative	-	-	2.0e-13	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	rglg2 (ring domain ligase2) ubiquitin-protein ligase	-	-	8.40056e-21	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	8.40056e-21	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytokinin metabolic process	GO:0009690	Biological Process	8.40056e-21	74%
Blast2go	auxin metabolic process	GO:0009850	Biological Process	8.40056e-21	74%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	8.40056e-21	74%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	8.40056e-21	74%
Blast2go	protein binding	GO:0005515	Molecular Function	8.40056e-21	74%
Blast2go	plasma membrane	GO:0005886	Cellular Component	8.40056e-21	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	8.40056e-21	74%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	8.40056e-21	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUP8

Fln msg: your sequence is shorter than subject: 61 - 423

Fln protein: KDLVPPEGNDVRNAQMCPFCLMNAKNLAFDCGHRTCYDCGQNIATCPICYSQITTRIKLY*

Protein Length: 62

Fln nts: ATAAGGATCTCGTTCCTCCAGAAGGAAATGATGTGCGGAATGCTCAAATGTGTCCATTCTGCCTGATGAATGCTAAAAATCTTGCTTTTGACTGTGGTCATCGGACCTGTTATGACTGTGGACAAAACATCGCTACATGCCCTATATGTTACAGTCAAATCACAACCAGGATAAAACTGTATTAA___AGTTGATGCAGGTTTGACAGAAGATAAACATTTATTGTGAGTAGACCATCTGAAATAGTTGAATCAGTGCTGGATTGGCATGGACCTATGTTTTGCCGAGTGAATTTGTGCAGCAACTGAAAT

Fln Alignment:

sp_v1.1_unigene11027___PPEGNDVRNAQMCPFCLMNAKNLAFDCGHRTCYDCGQNIATCPICYSQITTRIKLY
A9NUP8_______________PPEFKDTQDAQMCPICLMNAKDLAFGCGHQTCYDCGQNIVTCPICRSDITTRIKLY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain