SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11000

Length: 1136 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11000

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	F10A12.27/F10A12.27 n=5 Tax=core eudicotyledons RepID=Q9ZNT0_ARATH	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	vacuolar sorting protein 4b	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Microtubule-severing ATPase.	EC:3.6.4.3	-	0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	91%
Blast2go	endosome organization	GO:0007032	Biological Process	91%
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	91%
Blast2go	protein binding	GO:0005515	Molecular Function	91%
Blast2go	ATP binding	GO:0005524	Molecular Function	91%
Blast2go	microtubule-severing ATPase activity	GO:0008568	Molecular Function	91%
Blast2go	multivesicular body	GO:0005771	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ATPase, AAA-type, core	IPR003959	-	0.0	91%
Blast2go	MIT	IPR007330	-	0.0	91%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2N1

Fln msg: Distance to subject end: 229 aas, your sequence is shorter than subject: 208 - 439

Fln protein: MYSNFKEQAIEYVRQAVKEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGASAGPAANGDAAVVTRAKTKPGNKDGDGDGEDPEQTKLRAGLNSAIIREKPNVKWSDVSGLESAKQALQEAVILPVKFPQFFTGRRKPWKAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGE

Protein Length: 209

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGTTGTCACAAGTGAAACGTCGTGACCTTGGCTGTCACTCAATGATTTTATTCTTCGTTCCGTCCGTGGACTTATCCTTTTTCCCTTCCATGATGTGAAAAACTCATTGGTGCCGGTTCCACGCCCATATAGCTTCCGTGCTTTTCTCTCATCAGTCAAAGCTGGAAGAATCGTTACCGTCTGCTGCCCTTTTCTTAATTATTGAAGGCGATCAAGTACAGAGGAAATCCTTTCTTATGCATTGAAGGTCCATGCAGTCAACTCTTTTGTTGCATTCAAAGAAATTCAGAGTATAGCTGAGATGGGTATCTCAGGGCTTTGATTTTCATAGAGTTACAGGCCTCGTGGGCACTTTGGTATCATAGGATTATGCGGTGAAAACCCAGTAGGGATAATTGTTTGATTGGGATATCCCTGTTCTTCATGTATTCTGCTCCACCAGACGAAACACCCAGTGCTTATACACATAGGAATTAGTAGCAGCA_-_ATGTATAGCAATTTCAAGGAACAGGCCATAGAGTATGTTAGACAGGCAGTGAAAGAAGATAATGCCGGGAATTATGCCAAGGCCTTTCCTCTTTACATGAATGCCCTTGAATACTTCAAAACTCATCTGAAGTATGAGAAGAACCCCAAGATTAAAGAGGCCATTACACAGAAGTTTACTGAGTATTTGCGAAGGGCGGAGGAAATCCGCGCTGTGTTAGACGATGGAGCTAGTGCAGGGCCTGCTGCAAATGGTGATGCAGCTGTTGTGACCAGAGCGAAGACCAAGCCCGGCAACAAGGACGGGGATGGAGATGGAGAGGATCCTGAGCAAACGAAATTGCGTGCGGGCCTCAATTCGGCCATTATTCGCGAGAAGCCTAACGTGAAATGGAGTGATGTGTCAGGGCTTGAAAGTGCCAAACAGGCTTTGCAAGAGGCAGTTATCCTTCCTGTAAAATTTCCCCAATTTTTCACAGGGAGACGAAAGCCCTGGAAAGCTTTTCTTTTATATGGACCTCCTGGAACTGGAAAGTCATACTTGGCAAAAGCTGTTGCGACCGAAGCAGATTCAACGTTTTTCAGTATTTCTTCTTCAGACCTTGTTTCAAAATGGATGGGTGAAAG

Fln Alignment:

sp_v1.1_unigene11000___MYSNFKEQAIEYVRQAVKEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLXXXXXXXXXXXXXXXVVTRAKTKPGNK-DGDGDGEDPEQTKLRAGLNSAIIREKPNVKWSDVSGLESAKQALQEAVILPVKFPQFFTGRRKPWKAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGE
A9P2N1_______________MYSNFKEQAIEYVRQAVQEDNAGNYAKAFPLYMNALEYFRTHLKYEKNPKIKEAITQKFTEYLRRAEEIRVVLDEGVGSRPSANGDAAVATKPKSKPGAKGDGDGDGEDPEQAKLRSGLNSAIIREKPNVKWTDVAGLESAKQALQEAVILPVKFPQFFTGKRKPWRAFLLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGE

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
401	63		36		1.0
436	87		12		0.992554
459		28		71	1.0
596		80		20	0.995493
671	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain