SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10981

Length: 1765 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10981

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MKK6; MKK6 (MAP KINASE KINASE 6); MAP kinase kinase/ kinase	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	map kinase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	86%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	86%
Blast2go	MAP kinase kinase activity	GO:0004708	Molecular Function	86%
Blast2go	protein binding	GO:0005515	Molecular Function	86%
Blast2go	ATP binding	GO:0005524	Molecular Function	86%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	86%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	86%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	86%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	86%
Blast2go	Protein kinase-like domain	IPR011009	-	86%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	86%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	86%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9P4

Fln msg:

Fln protein: MRKKDLKQLKLAVPAQEAPITNFLTASGTFQDGGLLLNRQGLRFISEDKENSPSDAQGEDNQLTLADLETVRVIGKGSGGIVQLVRHKWTNRVFALKVIQMNVQETVRKQIVEELKINKASHCPYVVVCHHAFYDNGVISLVLEYMDCGSLADVIKQVKTILEPYLAIVCKQVLEGLVYLHHERHIIHRDIKPSNLLVNHKGEVKITDFGVSAVLANSMGQRDTFVGTYNYMAPERISGNVYGYSSDIWSLGLVILECAIGRFPYLPLEQEEGWLNFYELLETIIEKPPPSAPPDQFSPEFCSFISACLQKDPKERMSPVDLLNHPFIKKFEDKDIDLAILIRTLDPPM*

Protein Length: 351

Fln nts: CATGGGCAATTTGGTTGGCGCCTCTAAGTTTACTCAGTCTCACGAAATATTTCGTCCACCTGGAGGACTGTTAAAGGCAGACCAAGCTAAGGTTACGGTGGGAGAAAATATTAATTAATTGACTTCACTACCAGAAGAAGCC_-_ATGAGGAAGAAGGATCTGAAACAGCTCAAGCTCGCAGTTCCTGCGCAGGAGGCACCCATTACCAATTTCTTGACTGCAAGTGGTACATTTCAGGATGGTGGTCTCCTTCTAAATAGACAAGGCTTACGATTCATTTCTGAAGACAAAGAAAATAGTCCATCTGATGCTCAGGGAGAGGATAACCAGCTCACCTTGGCAGATCTAGAAACTGTGAGAGTAATTGGAAAAGGAAGTGGAGGAATTGTTCAACTTGTACGACATAAATGGACAAATCGAGTTTTTGCTCTAAAGGTTATCCAAATGAATGTCCAAGAGACTGTTCGGAAACAGATTGTAGAAGAACTGAAAATAAACAAAGCCTCACATTGTCCATACGTTGTAGTATGTCACCATGCCTTCTACGATAATGGTGTTATATCCTTAGTTTTGGAATACATGGATTGTGGCTCTCTTGCAGATGTCATTAAGCAAGTGAAAACTATTCTTGAACCGTATCTTGCTATTGTCTGTAAGCAGGTTCTTGAAGGTTTGGTGTATTTGCACCATGAACGGCATATAATTCACAGGGACATTAAACCATCAAATCTGTTAGTGAATCATAAAGGTGAAGTAAAGATTACAGACTTTGGTGTTAGTGCAGTTCTGGCAAACTCCATGGGGCAACGTGACACCTTTGTTGGCACCTATAATTATATGGCGCCAGAGCGCATTAGTGGAAATGTATATGGGTATAGCAGTGATATCTGGAGCTTGGGACTTGTTATATTAGAGTGTGCAATAGGCCGCTTCCCTTATTTACCTCTTGAACAAGAAGAAGGTTGGTTGAACTTCTATGAGCTGTTGGAGACAATAATTGAGAAACCACCACCTTCTGCTCCACCAGATCAATTTTCTCCAGAATTTTGCTCATTTATTTCAGCCTGCCTTCAAAAGGACCCTAAGGAGAGAATGTCACCTGTGGATCTTTTGAATCATCCATTTATAAAAAAGTTTGAGGACAAAGACATTGATCTAGCAATTTTGATTCGCACTCTAGACCCTCCTATGTAG___TTCCTTTGCGCATCTAAAAGATGCAAGTGATGAGATAGAATTGTTCTTCTAGATTCTGGGATTTCTTTCAAGGTGCAAAGAGCAAAAGTAACATTCAGCTTCTTGTCACACAAGTTTGTAAAGTATGACGTTTGGGTGAACTGAGGAACTTGCCATCAGAAAAGTCCATACAGTCCGAAGAGAGATGTGATATTATTTCGGTTATTTGGGACCTACTGTGTACTGTACTATTTACGCCATATTTCCAACAACGTTATTGGCATGTAGGGGTAAAATTTAGGCCAAGTCTTTTTTGCTTTCTTGGAGATATCATGCCAGAATTTTTTGATATAGTTTAGACTGGATTCCAGCAGTGTACCTATGCCTTTTGCGATGTATAGGTATGTGATTACAATAAACACACAAATGATATTGCATGGGAAAAGTAGAAAATTCATGAATCTTTATGTTTTATGGATGTTGAAAATACGGGTTACCCCTAATGGATGGTTATAATAAATTCGACTTAGTGTAAAAACTCTTTGAAAATTGAGAAATACTGATACATTGCATTGACCTGCCTACACTGGACTC

Fln Alignment:

sp_v1.1_unigene10981___MRKKDLKQLKLAVPAQEAPITNFLTASGTFQDGGLLLNRQGLRFISEDKENSPSDAQGEDNQLTLADLETVRVIGKGSGGIVQLVRHKWTNRVFALKVIQMNVQETVRKQIVEELKINKASHCPYVVVCHHAFYDNGVISLVLEYMDCGSLADVIKQVKTILEPYLAIVCKQVLEGLVYLHHERHIIHRDIKPSNLLVNHKGEVKITDFGVSAVLANSMGQRDTFVGTYNYMAPERISGNVYGYSSDIWSLGLVILECAIGRFPYLPLEQEEGWLNFYELLETIIEKXXXXXXXXXXXXEFCSFISACLQKDPKERMSPVDLLNHPFIKKFEDKDIDLAILIRTLDPPM
D5A9P4_______________MRKKDLKKLKLAVPAPETPMSDFLTASGTFQDGDLLLNRQGLRLISQENDESPPPIEPLDNQFTLADLETVSVIGKGSGGVVQLVRHKWTGQFFALKAIQMSIQESVRKQIVQELKINQASQCPNVVVCYHAFYNNGVISIVLEYMDCGSLADVIKRVKTFTEPYLAVICKQVLKGLIYLHRDRHIIHRDIKPSNLLVNHKGEVKITDFGVSATLANSMGQRDTFVGTYNYMSPERISGSTYGFSSDIWSLGLVVLECATGRFTYLPPGQEEGWLNFYELLETIVEQPAPCASPDQFSPEFCSFISACVQKDPKDRMSATDLLNHPFIKRYEDQNVDLAALLSSLSSPV

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
402	20		80		0.995493
522		14		85	0.993533
1095	85	14			0.993533
1133	90			10	0.90298
1134	90		10		0.90298
1150	90		10		0.90298
1372		86	13		1.0
1375	81	18			1.0
1376		13	86		1.0
1377	81			18	1.0
1378			86	13	1.0
1379	86		13		1.0
1381	81	18			1.0
1385		13	81	4	1.0
1388	81	13	4		1.0
1389	9			90	0.999842
1390		9		90	0.999842
1665	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain