SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10958

Length: 1661 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10958

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	oligosaccharyl transferase, putative (EC:2.4.1.119); K07151 dolichyl-diphosphooligosaccharide--protein glycosyltransferase [EC:2.4.1.119]	-	-	75%
FL-Next	tr=Oligosaccharyl transferase, putative; Ricinus communis (Castor bean).	-	-	77%
Blast2go	protein	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Dolichyl-diphosphooligosaccharide--protein glycotransferase.	EC:2.4.1.119	-	0.0	91%

Source	KEGGs	Term	Identity
Blast2go	N-Glycan biosynthesis	00510	91%
Blast2go	Various types of N-glycan biosynthesis	00513	91%
Blast2go	Metabolic pathways	01100	91%

Source	ECs	Term	Type	e value	Identity
AutoFact	Dolichyl-diphosphooligosaccharide--protein glycotransferase.	EC:2.4.1.119	-	0.0	75%

Source	KEGGs	Term	Identity
AutoFact	N-Glycan biosynthesis	00510	75%
AutoFact	Various types of N-glycan biosynthesis	00513	75%
AutoFact	Metabolic pathways	01100	75%

Source	GOs	Term	Type	Identity
Blast2go	protein glycosylation	GO:0006486	Biological Process	91%
Blast2go	response to salt stress	GO:0009651	Biological Process	91%
Blast2go	dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0004579	Molecular Function	91%
Blast2go	membrane	GO:0016020	Cellular Component	91%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Oligosaccharyl transferase, STT3 subunit	IPR003674	-	0.0	91%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9RKK0

Fln msg: Overlapping hits, possible frame ERROR between 189 and 188, your sequence is shorter than subject: 287 - 779

Fln protein: VLDKKEQKKWPLLLPLEASAVGILLLIVLGSFYVIHCVWAAAEAYSAPSIVLSSHTPDGVHVxxDDFREAYAWLSHNTDENDKVASWWDYGYQTTAMANRTVIVDNNTWNNTHIATVGTAMSSPERQAWEIFESLDVKYVLVVFGGLVGYPSDDINKFLWMVRIGGGVFPHIKEPDYLRDGQYRIDSQATQTMLNSLMYRLSYYRFTEADGGRGFDRVRRTEIGKKYFKLSHFEEVFTTHHWMVRIYKLKPAKNRLRGKNKKRTKSSTKRGKYSSSKNQVQKNPWH*

Protein Length: 288

Fln nts: GTTTTGGATAAAAAGGAACAGAAGAAGTGGCCATTGCTTCTTCCTTTAGAAGCATCTGCTGTTGGTATTTTGCTACTTATTGTATTGGGAAGCTTTTATGTGATTCATTGTGTCTGGGCTGCAGCAGAAGCTTATTCAGCTCCATCGATTGTGCTTTCATCTCATACACCTGATGGAGTTCATGTTxxxxxxGATGATTTTCGAGAAGCATATGCATGGCTAAGCCACAATACTGATGAGAATGACAAGGTTGCATCTTGGTGGGACTATGGATACCAAACAACTGCAATGGCTAATCGAACTGTGATAGTTGACAACAACACATGGAATAATACACATATTGCAACTGTTGGCACAGCTATGTCATCTCCAGAGAGACAGGCCTGGGAAATTTTTGAGTCATTGGATGTCAAATATGTTTTAGTGGTATTTGGAGGTTTGGTTGGATATCCAAGTGATGATATCAATAAATTTCTCTGGATGGTTCGCATTGGAGGAGGTGTTTTTCCACATATAAAGGAACCTGATTATCTTAGAGATGGTCAGTATCGCATAGATTCCCAGGCGACACAAACAATGCTGAATTCCCTAATGTATAGGCTCTCATATTATCGTTTTACAGAAGCAGATGGTGGTAGAGGATTTGACAGAGTGAGGAGAACTGAGATAGGGAAAAAGTACTTCAAGCTGAGCCACTTCGAGGAGGTTTTTACTACTCACCATTGGATGGTTCGCATTTATAAGCTCAAGCCTGCGAAAAATAGGCTTAGAGGGAAAAACAAGAAGAGAACTAAATCGAGTACAAAACGGGGCAAGTATTCAAGTTCAAAGAACCAAGTTCAAAAGAACCCATGGCATTGAAGTGTCATCCAATTACCATCCTTGCCAAAAGGATGAGTACTTTCCTTTTATTACTATTCTCGGTGCAGGGTTTTCCATCTGGAGATCAAATCATCGTACTTTCCATATTCAAGCTTGCCTGCTTGGTGGATGGCTACAATGGCTTATACATGGTTGTTACATTTCCCATATTGGATATCAATTGACACAGTACTGTTGAAGAAATCCGTTGATAATTACAATTTGAGATGATTTCAGGTATTAATCTGGATGAGAAATTGGAAATCTAAACACATAATGTAATACAGGATAAACTATATGAAGCTCATCATCAATTTTGCAAGGTCTGTTATAGCAGCCATCTCCATTGGCGGGCTAGTACCAGAACGATATTTTATTTTTTGGTCTTCCAACTTCTGATTTCAGCAAAATGTTCATCGTTAGCTTTGCAATGTAGCTTTCTGTCAAATGCATGATAGTTGTACTTAAAATGGAGCAAGAAGAGGTGTAATGTAATCATTCATACTTTAATCATCTACAGATGATAATGATATGGTCATAAACAGTAAAATATTTTCTAGTTAAATAATAAAGCCAGCCACTGTTAATAGGACTATCTCATTTCCCCATGTAAGTGAAATCTAAAAATTTAATGGTTTTCCTTGTTGGGTGACATGCCGTACTATGTCGTGTTTGCTGATGATCTCTTCACGGATTAGCTTGGTATTAGAACCAAGAATCAAATTCCCATCTGGGGCCTTGACAACCAGAAACTAGGTTTTTTATAGACACTCTTGGTGCTTGAGAAAATCGAAGGGTGCAG

Fln Alignment:

sp_v1.1_unigene10958___LLLPLEASAVGILLLIVLGSFYVIHCVWAAAEAYSAPSIVLSSHTPD-GVHVxDDFREAYAWLSHNTDENDKVASWWDYGYQTTAMANRTVIVDNNTWNNTHIATVGTAMSSPERQAWEIFESLDXXXXXXXXXXXXXXPSDDINKFLWMVRIGGGVFPHIKEPDYLRDGQYRIDSQATQTMLNSLMYRLSYYRFTEADGGRGFDRVRRTEIGKKYFKLSHFEEVFTTHHWMVRIYKLKPAKNRLRXXXXXXXXXXXXXXXXXXXXNQVQKNPWH
B9RKK0_______________LVLPLEASIFGILLLVLLGAYYVVHCVWAAAEAYSAPSIVLTSHTHDGGLHVxDDFREAYAWLSHNTEVDDKVASWWDYGYQTTAMANRTVIVDNNTWNNTHIATVGTAMSSPEKAAWEIFNSLDVKYVLVVFGGLVGYPSDDINKFLWMVRIGGGVFPHIKEPDYLRDGQYRIDSQATPTMLNSLMYKLSYYRFVETD-GKGFDRVRRTEIGKKYFKLTHFEEVFTTHHWMVRIYKLKPQKNRIRGKAKKKSKTSSTPSSKRSRAS--KRNPWH

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
561		84		15	0.999986
1213	3		87		1.0
1271	33			66	0.997452
1289	8		91		0.999807
1418		90		10	0.90298
1457	33			66	0.997452
1458	33	66			0.997452
1459	33			66	0.997452
1460	33	66			0.997452
1462	33			66	0.997452
1463	33			66	0.997452
1464	33			66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain