SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10948

Length: 1935 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10948

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UVR8; UVR8 (UVB-RESISTANCE 8); chromatin binding / guanyl-nucleotide exchange factor	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	81%
Blast2go	guanyl-nucleotide exchange factor activity	GO:0005085	Molecular Function	81%
Blast2go	chromatin binding	GO:0003682	Molecular Function	81%
Blast2go	cytosol	GO:0005829	Cellular Component	81%
Blast2go	nucleus	GO:0005634	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Regulator of chromosome condensation, RCC1	IPR000408	-	0.0	81%
Blast2go	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNM4

Fln msg: your sequence is longer than subject: 443 - 286

Fln protein: MEVEEPTGNDGQRRKVLLISAGANHTVALLSGNLVCSWGRGEDGQLGHGDAHDRPIPTIVSALDGCEITSVICGADHTTAYSDSTLVVYSWGWGDFGRLGHGDSSDLFIPQAIKTLQGLRIKQIACGDSHCLAVTINGEVQSWGRNQNGQLGLGNTEDSLVPQKIQGFQGIAVKMVAAGAEHTVAVTEDGKVYGWGWGRYGNLGLNDRNDRLVPEEVAAINGEKFTMVACGWRHTIAISDSGSLYTYGWSKYGQLGHGDNEDHLVPCRVEGLRNAHIAQISGGWRHTMALDVDGQLYGWGWNKFGQLGVGDNIDHSGPQRVKLPSEEEVVHVSCGWRHTVVITSKSNVFSWGRGTSGQLGHGDILDRNMPLLIEALSVDGSACEQIQTSKTTVLSGSSWISPSERYAIVPDETGTVQLSTVPKSSIGDASVPDGDIKRVRTE*

Protein Length: 444

Fln nts: GACTCCATTTATGGGGACTGTTTACCGGAAAATGTTACATCTCGTTCGTTGAAGCTTGAATAATTGTGTTCAGTATTTTTCTATGCGATGTTGCGGCTTTTCAGTGTCATCTGTACTCCTTTATAGGTGGAGAATTGCATTTATTATGATTGTCTGGAGTGATATTTTGCGAGTTGCGCGAGTTTAGGGTTGGTGCAGAAAGAAGGAAGGAAAAG_-_ATGGAGGTAGAAGAGCCCACGGGCAATGATGGACAGCGTCGCAAAGTTTTGCTTATTTCAGCTGGAGCGAACCATACGGTTGCCCTTCTCTCTGGAAATTTGGTCTGCTCTTGGGGCCGTGGAGAAGATGGACAATTAGGGCATGGGGATGCACATGATCGACCTATTCCCACAATTGTAAGTGCTCTTGATGGTTGTGAAATTACCTCAGTCATTTGCGGAGCTGATCATACGACAGCATATTCAGACTCGACACTGGTTGTTTACAGTTGGGGCTGGGGAGATTTTGGAAGGCTTGGACATGGAGACTCTAGTGATTTGTTTATTCCACAAGCAATCAAGACCCTACAAGGACTTCGGATCAAGCAAATAGCATGTGGGGATAGTCATTGTCTAGCTGTCACAATAAATGGGGAAGTGCAAAGTTGGGGACGCAACCAAAATGGGCAGCTTGGCCTTGGAAACACGGAAGACTCCCTTGTGCCTCAGAAGATTCAAGGTTTCCAGGGAATAGCTGTAAAGATGGTAGCAGCAGGTGCTGAACATACAGTTGCTGTAACAGAGGATGGAAAGGTTTATGGGTGGGGGTGGGGTCGCTACGGAAACCTAGGTCTGAATGATAGAAACGACCGGCTTGTTCCAGAGGAAGTGGCAGCTATAAATGGAGAAAAGTTTACCATGGTTGCTTGTGGATGGCGCCACACTATTGCAATCTCTGATTCTGGCAGTTTGTACACGTATGGTTGGAGTAAGTATGGACAACTGGGTCATGGCGATAATGAAGATCATCTTGTTCCATGTCGTGTCGAGGGCTTAAGGAATGCTCACATAGCTCAGATCTCTGGTGGCTGGCGACATACAATGGCTCTCGATGTAGATGGGCAACTGTATGGTTGGGGATGGAATAAGTTTGGCCAGCTTGGTGTTGGAGATAATATTGACCACTCTGGCCCACAGAGAGTGAAGCTTCCTTCTGAAGAGGAGGTTGTGCATGTTTCTTGTGGATGGAGACATACAGTTGTAATTACATCCAAAAGTAATGTATTCTCCTGGGGCAGGGGCACAAGTGGCCAGTTAGGACATGGAGACATCCTTGACAGAAATATGCCTCTACTCATAGAAGCCTTGAGTGTGGATGGCTCAGCGTGTGAGCAAATTCAAACTTCTAAAACAACAGTTCTATCAGGCTCAAGTTGGATATCACCATCAGAGAGATACGCAATTGTCCCAGATGAAACTGGTACCGTTCAACTTTCTACTGTCCCCAAGAGCTCTATTGGTGATGCTAGTGTTCCAGATGGTGACATTAAGCGTGTACGAACAGAATAG___TGAAGTAATAAGCAGTGCTGCTTATTTACTATGGAAGATGTGATTTATATTAGGCTATTTCTGGAAGTGTCTGTAATTATAAAATAAGAGATGTATAAGACTTGTCTAGTTATGCACTTGGAATTAATCGAATATGACAATATGACAGCTATAGAGCGAATATTTATTCCGCGGTGGAAAAAGCTTTCAGATGCAAGTGATTGCAGATGCTTTAAACTGGTGTGCATTCATTTGGAGCTCAAGAAACAATCCTTGTGACTATGAAACACCGCATGATACTGAAAATGACGCAATAATTATATTGTAGAGACATAAATTAGTGATGTTAAATTGTTGGCCGTGTAATTGAATAACTGTGTTAGTGTTATATATCAGCTATTGCTTTTGTTTC

Fln Alignment:

sp_v1.1_unigene10948___MEVEEPTGNDGQRRKVLLISAGANHTVALLSGNLVCSWGRGEDGQLGHGDAHDRPIPTIVSALDGCEITSVICGADHTTAYSDSTLVVYSWGWGDFGRLGHGDSSDLFIPQAIKTLQGLRIKQIACGDSHCLAVTINGEVQSWGRXXXXXXXXXXTEDSLVPQKIQGFQGIAVKMVAAGAEHTVAVTEDGKVYGWGWGRYGNLGLNDRNDRLVPEEVAAIN
B8LNM4_______________MEVEEATRNDGQRRKVLLISAGASHTVALVAGNLVCSWGRGEDGQLGHGDAEDRPMPTFVSALDGCEITSVICGADHTTAYSDSRLVVYSWGWGDFGRLGHGNSSDLFIPHAIKTLQGLQIKQIACGDSHCLAVTINGEVQSWGRNQNGQLGVGDNIDHSFPQRVKLPAEEEVVQVSCGWRHTVAITGKSNVFSWGRGTSGQLGHGDILDRNMPVLIEALS

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
245		25		75	0.996473
344	75			25	0.996473
428		66		33	1.0
584		87	12		0.992554
748		10		90	0.90298
817	11		88		0.923564
1045		11		88	0.923564
1048	10		90		0.90298
1053	90		10		0.90298
1227			10	90	0.90298
1271		10	90		0.90298
1278	90		10		0.90298
1631	78		7		0.999974

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain