SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10935

Length: 1343 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10935

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	haloacid dehalogenase (HAD) superfamily protein; K07015	-	-	54%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	63%
Blast2go	protein	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	72%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	HAD-superfamily phosphatase, subfamily IIIA	IPR010021	-	0.0	72%
Blast2go	HAD-like domain	IPR023214	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9RJR3

Fln msg: your sequence is longer than subject: 308 - 242

Fln protein: MTAPTLFVSVHISAFSSILSIPDLKTNYKISETSRYSPLKLKFVRGHRCKKLKKSVGQFFPTLGIMPTAETAYRTVAGNIEEESVGSKTMWAKLGQRFNSAGIMSSLRVIFREQHLALPHLNVPDIRWVNWKELKEQGFQGIVFDKDNTLTAPYAPSLWPAIADSLEDCKSIFHGRIALLSNSAGLYQYDPDGSEAKALEELIGIPVIRHGSKKPSGTAKDIEKYFGYDPSLLVMVGDRHFTDIVYGNRNGFLTILTEPLTLAGEPFIVRQVRKLEGFLVQCWCRKGLKPASHHLLLSKHEYIKSPD*

Protein Length: 309

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTCAAACCATGACGCCACAGGAATCCGATAAGGATGGGAAAGCAACAGGACAGTAATGGTGAATATTTTATGTTCTAGACAGCC_-_ATGACTGCCCCTACGCTCTTCGTTTCCGTACACATTTCTGCTTTCTCATCGATACTCTCAATCCCAGATCTGAAAACCAACTATAAGATCTCGGAGACCAGCAGATATTCTCCTCTAAAATTAAAGTTCGTGAGGGGTCATAGATGCAAGAAGCTCAAAAAATCTGTAGGGCAGTTCTTTCCTACTCTGGGCATTATGCCTACCGCTGAGACCGCTTATAGGACAGTAGCCGGCAATATCGAAGAAGAAAGTGTGGGCTCCAAGACCATGTGGGCGAAGTTAGGTCAGAGGTTCAATTCCGCGGGCATCATGTCGAGTTTGAGAGTTATATTCAGGGAGCAGCATTTGGCTCTGCCGCATTTAAATGTCCCAGATATAAGGTGGGTCAACTGGAAAGAGTTGAAGGAGCAAGGATTTCAGGGGATTGTGTTCGATAAAGACAATACGCTGACGGCTCCTTACGCGCCCTCTCTTTGGCCCGCCATTGCAGATTCTCTAGAGGATTGTAAATCTATATTTCACGGGCGGATTGCTCTGCTCAGTAATTCAGCTGGGCTTTATCAATATGATCCTGATGGTTCAGAAGCAAAAGCTTTGGAGGAGCTTATTGGGATACCGGTTATAAGACATGGGTCAAAGAAGCCATCGGGAACGGCAAAAGACATTGAAAAATACTTCGGTTATGATCCGTCATTACTTGTGATGGTTGGTGATCGCCATTTTACAGATATTGTTTATGGCAATAGGAATGGTTTTCTAACTATACTGACAGAGCCTTTAACTCTAGCTGGGGAGCCTTTCATTGTGAGACAGGTCAGGAAGTTGGAGGGTTTTTTAGTACAGTGTTGGTGTCGGAAAGGGCTTAAACCTGCAAGTCATCATTTGCTTTTGAGCAAACATGAGTACATTAAAAGTCCAGACTGA___TAAGGCACTCTTCTGAGTGTTCCGGATTTTGTACATTCGCTGAGGATTGCAAGGCCAGCTTGTAGTCTTCTAATGATCTTCAGATGGGGTATAAGGGTTGAGATTGGTTGATCTAAACCATGTTCAAGTGATCTCTATACTTCATAGGTTGAGAATGGTTGATTGTATTTTGAGTCATCAATCAGATTTATTGTCCATCCTATTTCTGCTTTCTCCTTTTGGGAAACATTTCATATGTTGAATATTTTGAGGTCCATGGCCTATTTGATTTAGCAAACAACTCTCTTCTTGATTTCCTCAATATAAAGCA

Fln Alignment:

sp_v1.1_unigene10935___KTMWAKLGQRFNSAGIMSSLRVIFREQHLALPHLNVPDIRWVNWKELKEQGFQGIVFDKDNTLTAPYAPSLWPAIADSLEDCKSIFHGRIALLSNSAGLYQYDPDGSEAKALEELIGIPVIRHGSKKPSGTAKDIEKYFGYDPSLLVMVGDRHFTDIVYGNRNGFLTILTEPLTLAGEPFIVRQVRKLEGFLVQCWCRKGLKPASHHLLLSKHEYIK
A9RJR3_______________KSIWSKLGQRVNIAGIQFASRVMLHDQHLAIPHISVPDIRWIDWKALHDHGFEGVVFDKDNTLTAPYAFALWPALSTSLQECQSVFEGRIALLSNSAGLYQFDPDGVEAKALEERLGIPVIRHGTKKPAGTAEDLVKHFGCDPSRIIMVGDRYFTDVVFGNNNGLLTIRPAPLTSIGEPFVVQKVRMLEEAAVGRWRRQNVQPKEHVLFTSAHDFIK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
28			33	66	0.997452
29		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain