SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10920

Length: 3342 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene10920
GCATGCCGGTAGCAACACAGGCATCTGCGTTAGCAAACAGCAGCAGTATAAACCATACTCAGAGCCAACCAGCATCTTTAAATCGGCAGAAGTCAGGTGGTAGGCGTACTGCTGCTGCAAATGGCATGCCATCAGTGGTGCCTACACCGACCATGTTTCCGATTCCAGTTGTGCCTCCACCTTTACCAGTTCAGGATTATATCTTGCCCGGTGGATCAAATCAAATGATCTCCAGTCAGGAAATTCATCCTGAACTTTCTTTCAAAGGGCCCACTGGCTTGGAAACTGGATTGAAAGGATTCATGCCAGGTCCTGGAAGTATGGACCATGGTAGACATTTCCAGCAGCAGAGATTGGATGGATCCTTTCAACGAGGTGATACAAATACATTTTCCAACAATTTTGGTAATAGACGTAGCAATGTGCGGGAGCAGGGTGCAAGGTTTAATCATGGGTGGAATTCTCACCGAGGATTTAACGCAAGAGACAACATTAACATGCAATCAAGAGTTGGACCAAGAAATTTTCTCAGGCCACCACCACCACCACCTTTTATTGGTCCATCTCCACCATTTATAAATCCTCCAGGTTTTCACGCTGGGCCGATGTACTACGTCCCAGCACCACCGCCAGAACCTATAAGGGGTTCACCTTTTTTTCCTCATGCTCCACCTCCTGCTGTTCTAATGCCTGGTCATGAACCTTCACCTTGGCGTGCTATGGTAATCAAACAAATCGAATACTATTTCAGTGTGGAGAATCTTATTAAAGACTACTATTTGCGTTCATGTATGGATGCACAAGGATGGGTGCCCATCTCAATAATTGCAAATTTCAACAGGGTTCGCAGCATGAAAATTAATGTTCATTTCATTCTTGATGCATTGCGAAGCTCAACTGTGGTTGAAGTGCAGGGTGATAAGATAAGAAAGCGAGAGGACTGGTCGAACTGGCTTCTACCTTCAGGACATAACAATTCTGTGTCAAGTACAAAGTTTTATCAAAACACTACTGATGACAAGGTCACAAATGATGTCAAAAGTGCTGAATTAGATCATAGAAGCAAATGTGATACATCTGGAGATGATGCCACCAGTAGTAAAAATAAGAATATGGTAGTATCTATGCAGGATGGTTTTATTAATTCCTCAACAGTGAGCTCATCCGATGCTTCTAATGGGAAAACATTAGCTAGCAGTGGAACACAACATTCTGGAACATGTGATGGTGGGAGTGATGTTCATGGGGCATGTAGCTTGGATACAAGTTCTGATAACAGACTTGTAGAGCTAAGCAGGGCTGGGAGAGGTTCATCTGATAGGGATATATCTGATAATATTCATGATTTTAGGTCAAATAGTAGCACAGGTATGGAGTCTTGCTCTCAGCAAGCAGATGTTTCCAATCAAAAAGATGTTGCTAACACGCAAGAAAGGACTGGTGTTTCAAGTAGTTTTGACACTGATGGTTTTGATATATCTCTATCTTCCAATGGGAGATCTGGTGGGCAGAAAAAAGGTGGCTTGTCAAAAGCCTTTGGAAAAGTTTCTATATCCAGAAATGAGGAAGATACCTTTCTGCTTGATGAAGAGGTGGAGTCTGAGCAGTTGACCAAAAAGGACAACCTACCACCATTCAAAAGTCGGACTGACGACGACGACGACGATGAACCAGACGTAAATGACCAGGATGTGCACCGACTGATTATTGTGACACAGAATCGAAAGATGAACAGGAGTGACAGGAGAGACGGGGCAGAGCAGGGTGCAATCTCAAATGAACTGGCAAACGCTATCAATGACGGTCTTTATTTTTATGAACAGGAGCTACGAAATGGGCGGTCAGAGAATGATCAGAGGAGTCAGCTAGGCTTGGAAACCAAACGTATTACAAATGATTCCAGGTCAGCTGGAATTGGTGGTGGCACAAGTTCTAAACCAAGCCTTGGTGGGATTGGTAGTAGCAGCTGTGAAGGATATGTGCAGTCCAATACAAGGAGGAGATCAAACAAAGGTGGTGGAGGTAGAATGCAGCCTTCACATAAAGAACGGTTATTTCCTAGCAGTGCTCGAAATCAAGGCACAGGACTTCGCAACCGACAAAGCATCATATCAGAAAGTCCACCTAGTAATTCTGTTGGGTTTTTCTTTGGATCAACACCACCAGACAACCATGGGGGAACAATGGCATCCTCAAAGCTTGCATCTTCTCCTCATGGATCATGTCTTGGCAGTGGCAGTTTTGCTGGAAGTAGTTCGCCAGTTGGTTCCATGCCGAAGTCTTTTCCTCCTTTTCAGCATCCAAGTCATGAACTTTTGGAAGATCATGGTTTTAAACAACAGAAATATTTGAAATTCTACAAGCGTTGCCTGGCAGAGCGCAAGAGAGTTGGTACTGGTTGCAGTGAGGAAATGAATACTCTCTACAGATTTTGGTCATTTTTCCTCAGAAATAATTTCAACCGCTCCATGTATAATGAGTTCCGAAGATTAGCACTGGAAGATGCAGCAGCAAAGTATAATTACGGCATGGAGTGCCTTTTTAGGTTCTACAGCTATGGATTGGAGAAGAAATTTAAGGAAAGTCTCTATGAGGATTTTGAACAGTTAACCATTGAATTCTACAAGAAGGGGAATCTTTATGGTCTTGAAAAATATTGGGCATTTCATCATTATCGCAAGAAGGATGGCAGGCCTTTGAAAAAGCATCAAGAATTGGAAAGGTTACTTACAGAGGAGTTCCGAACAATACACGACTTTCCAGCAAAAGATAAATTGCCCAAAGATGTTAATGCAAATGAGAAAGCGAGCAATGGTTTATCCTCTATGGATGATGTGAAGACTGGGATATCCATCTGCTGAGCAAATCTTGTTGATATTTGAGCCATCAGTTGCATATCTTATCATATATCAGGATTTTTGCTGTGTTATTCAGTGTTCCATTCTCATTTTCAAGGGTATGGCTAAATTAGCTGATACACGTCAAGATGTTCTTTACATTACAACCCTGTATTTAGTTTTATCACACGGCCCCTGATTTTTTTCCCAAGGCTTCTCCAGGTGTATTTCTTGTCAAGAGAAACTGCATTAACCTCAATGTAATTGAAGAATTACCATCACTACATTGACATTTGCTGTTCTGCCTCTTGAAAGGTTGATAATTGGGGTAAAATCTCTGGTTGTGAAGCTATACATCCACTAGGCTCATGGCCGTTGGAATTTCTTTTTGATATGAGTAATGGCTAGTTAAGGTGGCTGCAAAGTTTGTTATCTAAGTCTTGCAATTTGTTGCTAGCGGCTGTGGCAATTAATATTGGCAGGAATCATTTCATAGCTGCCTACG

Ace file of the UniGene sp_v1.1_unigene10920

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lupus la ribonucleoprotein, putative n=1 Tax=Ricinus communis RepID=B9S0U6_RICCO	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	lupus la	-	-	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytosol	GO:0005829	Cellular Component	0.0	60%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	60%

Source	InterPros	Term	Type	Identity
Blast2go	Protein of unknown function DM15	IPR006607	-	60%
Blast2go	RNA-binding protein Lupus La	IPR006630	-	60%
Blast2go	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	60%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9L9

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 953 - 465

Fln protein: MPVATQASALANSSSINHTQSQPASLNRQKSGGRRTAAANGMPSVVPTPTMFPIPVVPPPLPVQDYILPGGSNQMISSQEIHPELSFKGPTGLETGLKGFMPGPGSMDHGRHFQQQRLDGSFQRGDTNTFSNNFGNRRSNVREQGARFNHGWNSHRGFNARDNINMQSRVGPRNFLRPPPPPPFIGPSPPFINPPGFHAGPMYYVPAPPPEPIRGSPFFPHAPPPAVLMPGHEPSPWRAMVIKQIEYYFSVENLIKDYYLRSCMDAQGWVPISIIANFNRVRSMKINVHFILDALRSSTVVEVQGDKIRKREDWSNWLLPSGHNNSVSSTKFYQNTTDDKVTNDVKSAELDHRSKCDTSGDDATSSKNKNMVVSMQDGFINSSTVSSSDASNGKTLASSGTQHSGTCDGGSDVHGACSLDTSSDNRLVELSRAGRGSSDRDISDNIHDFRSNSSTGMESCSQQADVSNQKDVANTQERTGVSSSFDTDGFDISLSSNGRSGGQKKGGLSKAFGKVSISRNEEDTFLLDEEVESEQLTKKDNLPPFKSRTDDDDDDEPDVNDQDVHRLIIVTQNRKMNRSDRRDGAEQGAISNELANAINDGLYFYEQELRNGRSENDQRSQLGLETKRITNDSRSAGIGGGTSSKPSLGGIGSSSCEGYVQSNTRRRSNKGGGGRMQPSHKERLFPSSARNQGTGLRNRQSIISESPPSNSVGFFFGSTPPDNHGGTMASSKLASSPHGSCLGSGSFAGSSSPVGSMPKSFPPFQHPSHELLEDHGFKQQKYLKFYKRCLAERKRVGTGCSEEMNTLYRFWSFFLRNNFNRSMYNEFRRLALEDAAAKYNYGMECLFRFYSYGLEKKFKESLYEDFEQLTIEFYKKGNLYGLEKYWAFHHYRKKDGRPLKKHQELERLLTEEFRTIHDFPAKDKLPKDVNANEKASNGLSSMDDVKTGISIC*

Protein Length: 954

Fln nts: GC_-_ATGCCGGTAGCAACACAGGCATCTGCGTTAGCAAACAGCAGCAGTATAAACCATACTCAGAGCCAACCAGCATCTTTAAATCGGCAGAAGTCAGGTGGTAGGCGTACTGCTGCTGCAAATGGCATGCCATCAGTGGTGCCTACACCGACCATGTTTCCGATTCCAGTTGTGCCTCCACCTTTACCAGTTCAGGATTATATCTTGCCCGGTGGATCAAATCAAATGATCTCCAGTCAGGAAATTCATCCTGAACTTTCTTTCAAAGGGCCCACTGGCTTGGAAACTGGATTGAAAGGATTCATGCCAGGTCCTGGAAGTATGGACCATGGTAGACATTTCCAGCAGCAGAGATTGGATGGATCCTTTCAACGAGGTGATACAAATACATTTTCCAACAATTTTGGTAATAGACGTAGCAATGTGCGGGAGCAGGGTGCAAGGTTTAATCATGGGTGGAATTCTCACCGAGGATTTAACGCAAGAGACAACATTAACATGCAATCAAGAGTTGGACCAAGAAATTTTCTCAGGCCACCACCACCACCACCTTTTATTGGTCCATCTCCACCATTTATAAATCCTCCAGGTTTTCACGCTGGGCCGATGTACTACGTCCCAGCACCACCGCCAGAACCTATAAGGGGTTCACCTTTTTTTCCTCATGCTCCACCTCCTGCTGTTCTAATGCCTGGTCATGAACCTTCACCTTGGCGTGCTATGGTAATCAAACAAATCGAATACTATTTCAGTGTGGAGAATCTTATTAAAGACTACTATTTGCGTTCATGTATGGATGCACAAGGATGGGTGCCCATCTCAATAATTGCAAATTTCAACAGGGTTCGCAGCATGAAAATTAATGTTCATTTCATTCTTGATGCATTGCGAAGCTCAACTGTGGTTGAAGTGCAGGGTGATAAGATAAGAAAGCGAGAGGACTGGTCGAACTGGCTTCTACCTTCAGGACATAACAATTCTGTGTCAAGTACAAAGTTTTATCAAAACACTACTGATGACAAGGTCACAAATGATGTCAAAAGTGCTGAATTAGATCATAGAAGCAAATGTGATACATCTGGAGATGATGCCACCAGTAGTAAAAATAAGAATATGGTAGTATCTATGCAGGATGGTTTTATTAATTCCTCAACAGTGAGCTCATCCGATGCTTCTAATGGGAAAACATTAGCTAGCAGTGGAACACAACATTCTGGAACATGTGATGGTGGGAGTGATGTTCATGGGGCATGTAGCTTGGATACAAGTTCTGATAACAGACTTGTAGAGCTAAGCAGGGCTGGGAGAGGTTCATCTGATAGGGATATATCTGATAATATTCATGATTTTAGGTCAAATAGTAGCACAGGTATGGAGTCTTGCTCTCAGCAAGCAGATGTTTCCAATCAAAAAGATGTTGCTAACACGCAAGAAAGGACTGGTGTTTCAAGTAGTTTTGACACTGATGGTTTTGATATATCTCTATCTTCCAATGGGAGATCTGGTGGGCAGAAAAAAGGTGGCTTGTCAAAAGCCTTTGGAAAAGTTTCTATATCCAGAAATGAGGAAGATACCTTTCTGCTTGATGAAGAGGTGGAGTCTGAGCAGTTGACCAAAAAGGACAACCTACCACCATTCAAAAGTCGGACTGACGACGACGACGACGATGAACCAGACGTAAATGACCAGGATGTGCACCGACTGATTATTGTGACACAGAATCGAAAGATGAACAGGAGTGACAGGAGAGACGGGGCAGAGCAGGGTGCAATCTCAAATGAACTGGCAAACGCTATCAATGACGGTCTTTATTTTTATGAACAGGAGCTACGAAATGGGCGGTCAGAGAATGATCAGAGGAGTCAGCTAGGCTTGGAAACCAAACGTATTACAAATGATTCCAGGTCAGCTGGAATTGGTGGTGGCACAAGTTCTAAACCAAGCCTTGGTGGGATTGGTAGTAGCAGCTGTGAAGGATATGTGCAGTCCAATACAAGGAGGAGATCAAACAAAGGTGGTGGAGGTAGAATGCAGCCTTCACATAAAGAACGGTTATTTCCTAGCAGTGCTCGAAATCAAGGCACAGGACTTCGCAACCGACAAAGCATCATATCAGAAAGTCCACCTAGTAATTCTGTTGGGTTTTTCTTTGGATCAACACCACCAGACAACCATGGGGGAACAATGGCATCCTCAAAGCTTGCATCTTCTCCTCATGGATCATGTCTTGGCAGTGGCAGTTTTGCTGGAAGTAGTTCGCCAGTTGGTTCCATGCCGAAGTCTTTTCCTCCTTTTCAGCATCCAAGTCATGAACTTTTGGAAGATCATGGTTTTAAACAACAGAAATATTTGAAATTCTACAAGCGTTGCCTGGCAGAGCGCAAGAGAGTTGGTACTGGTTGCAGTGAGGAAATGAATACTCTCTACAGATTTTGGTCATTTTTCCTCAGAAATAATTTCAACCGCTCCATGTATAATGAGTTCCGAAGATTAGCACTGGAAGATGCAGCAGCAAAGTATAATTACGGCATGGAGTGCCTTTTTAGGTTCTACAGCTATGGATTGGAGAAGAAATTTAAGGAAAGTCTCTATGAGGATTTTGAACAGTTAACCATTGAATTCTACAAGAAGGGGAATCTTTATGGTCTTGAAAAATATTGGGCATTTCATCATTATCGCAAGAAGGATGGCAGGCCTTTGAAAAAGCATCAAGAATTGGAAAGGTTACTTACAGAGGAGTTCCGAACAATACACGACTTTCCAGCAAAAGATAAATTGCCCAAAGATGTTAATGCAAATGAGAAAGCGAGCAATGGTTTATCCTCTATGGATGATGTGAAGACTGGGATATCCATCTGCTGAGCAAATCTTGTTGATATTTGAGCCATCAGTTGCATATCTTATCATATATCAGGATTTTTGCTGTGTTATTCAGTGTTCCATTCTCATTTTCAAGGGTATGGCTAAATTAGCTGATACACGTCAAGATGTTCTTTACATTACAACCCTGTATTTAGTTTTATCACACGGCCCCTGATTTTTTTCCCAAGGCTTCTCCAGGTGTATTTCTTGTCAAGAGAAACTGCATTAACCTCAATGTAATTGAAGAATTACCATCACTACATTGACATTTGCTGTTCTGCCTCTTGAAAGGTTGATAATTGGGGTAAAATCTCTGGTTGTGAAGCTATACATCCACTAGGCTCATGGCCGTTGGAATTTCTTTTTGATATGAGTAATGGCTAGTTAAGGTGGCTGCAAAGTTTGTTATCTAAGTCTTGCAATTTGTTGCTAGCGGCTGTGGCAATTAATATTGGCAGGAATCATTTCATAGCTGCCTACG

Fln Alignment:

sp_v1.1_unigene10920___RAMVIKQIEYYFSVENLIKDYYLRSCM--DAQGWVPISIIANFNRVRSMKINVHFILDALRSST--VVEVQGDKIRK
D5A9L9_______________RQKVVKQVEFYFSDANLPTDKYLMKFVKKDPEGFVPIPFLANFRKVKNLVSNHSLVAAALRTSSQLVVSEDGKKVRR

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
443	11		88		0.923564
530			11	88	0.923564
531			11	88	0.923564
532			11	88	0.923564
756			66	33	0.997452
757			33	66	0.997452
759			33	66	0.997452
1178		28		71	1.0
1209		33	66		1.0
1301		71		28	1.0
1348	83		16		0.994512
1851		10	90		0.90298
1860		90	10		0.90298
1862		10	90		0.90298
1866	90	10			0.90298
1867		10	90		0.90298
1913	88		11		0.923564

SSRs (tot: 2)

Start position	End position	Sequence	Length
534	550	CCA CCA CCA CCA CCA CC	17
1650	1666	GAC GAC GAC GAC GAC GA	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain