SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10873

Length: 3492 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene10873
GTCATCTATCTATACCTATTATGAAGTCTGATTGAGAATTTTCGGCGGAGAATTTACTGGGAAAGGAAGAAGAGGAAAGGAGAGATGGCGACTCTGGGAGATATTGCAGTGGCGGGAGTCATAAATCTTTTGATCGCCCTTGGGTTTCTGTTGGCATTTACGTTTCTGAGGTTGCAGCCCATGAACGATAGAGTTTACTTTCCCAAATGGTATCTTAAGGGGTCAAGAAAAAGCCCCCGGCACTCCAGATCAGCTATAGGTAGATTCGTAAATTTGGATTACAAAACGTACCTGCGATTCCTGAATTGGATGCCGGAGGCTCTCAAAATGCCGGAGTCGGAGCTCATTGATCACGCAGGCTTTGATACTGTTGTTTACCTTCGGATCTACATTGTGGGTCTGAAAATCTTTGTACCTTTGGCAGTTCTTGCTTGTGCAATCCTTGTTCCAGTAAATGCCACAGGAGGGACTTTAGTAAACTTAAAGAAAGAGTTGGTCTTTAGTGACATTGACAAACTTTCAATATCAAATGTCCAGAGTGGTTCTCAAAGGTTTTGGGCTCATCTATTAATGGCGTATGTGTTTTCAGCATGGACATGTTTTGTGCTTTACGTAGAGTATGACAAAATAGCAAGCATGAGGCTGCATTTCTTGGCTTCACAACGTCGTCGTCCCGATCAATTCAGTGTCCTAGTCAGAAATGTGCCTCCAGATACCGATGAGACAATTAGTGAGCATGTTGATCACTTTTTTCGAGTTAACCATCCTGATCACTACCTCACTCATCAGGTTGTCTACAATGCAAATAAGCTTGCTAAGCTTGTTAAGAAGAAGGAGAAACTCAAAAACTGGCTTGATTACTACCAGATCAAGTATTCAAGACATCCTGAAAAGAGGCCCACAACAAAGGAAGGTTTTCTCGGTCTTTGGGGTGAAAGAGTGGATGCCATTGACTTTTACACAGCAGAAATTGACACTTTGGTTACGGAAATAGCAGAAGAACGAGAACGGGTACTGAAAGATCCTGAGGCAATCATGCCTGTTGCATTTGTTTCATTTAATACACGCTGGGGAGCTGCTGTTTGTGCACAAACACAACAAAGCAAGAACCCAACAATTTGGTTAACAGAGTGGGCCCCTGAGCCTCGTGATGTATACTGGAGCAATCTGGCCATTCCATTTGTTGCAATCGCAATTCGGAAACTAGTCATGGGTGTTACACTCTTTTTCCTTGTATTTTTCTTCATGATCCCAATTGCAGCAGTCCAGTCATTGGCCAACCTTGATGGAATTGAGAAGGTTGCTCCCTTCCTGAAACCAATAATAGAAGTGAAAATTATCAAGTCATTTCTTCAAGGATTTCTACCAGGGTTGGCTTTGAAGATATTTCTTATTTTACTTCCTACTATCTTGATGGTCATGTCAAAAATTGAAGGTTATGCAGCAACATCTATACTTGAAAGGAGAGCTGCTGCAAAGTATTATTACTTTATGCTGGTGAATGTATTTCTTGGAAGTATAATTACTGGAACAGCATTTCAACAGCTTCATGCTTTTCTTCATCAATCTCCAACAGAGATACCAAAGACTATTGGAGTTTCAATACCAATGAAAGCTACCTTTTTCATCACTTATATCATGGTTGATGGATGGGCTGGCATTGCTGGTGAAATTCTCCGATTGAAGCCGTTAATCATTTTTCATCTGAAGAACATGTTTTTGGTGAAGACTGAGAAGGATAGGGAGAATGCCATGGATCCTGGCAGTGTCGGTTTCCCAGAAGCACTTCCTCAACTTCAACTATACTTTCTTCTTGGACTTGTGTATGCAGTGGTCACGCCAATACTTCTGCCTTTCATAGTCATCTTTTTTGGATTTGCATACTTTGTGTATCGACATCAGGTTATCAATGTGTATAATCAGGAGTATGAGAGTGTAGCAGCATTTTGGCCTCATGTTCATAGTCGTATAGTTGCTGCATTAGTAATATCACAGCTACTACTACTTGGTCTGCTAAGCACTAAAAAAGCAGCTAACTCCACGCCTATACTTTTAGCCCTTCCAGTGTTGACAATTTGGTTTCACAAGTTTTGTAAAAGTCGTTTTGAGCCTGCTTTCCGAAGATATCCACTGGAGGAAGCCATGGCAAAGGATACTTTGGAGCGGGCCACAGAACCAAACCTTAATCTCAAAGGATACCTAACTAATTCGTACTTGCATCCTATCTTTAAGAGTGAAGAGAACGAGGAGAATGAAATGGGAGAATGGAGAGACGATGATAGTTTGGTACTGACAAAGCGTCATTCAAAACTGAACACCCCTGGAGCTAGTGAGAACAGCTACATTGCCTCACCAGAGTATGATGAGGAGACCTATAACTACCAAGTCTGATTATGCTTTCGTATTTAATCCTTCAGAGAAGGAGCTTAGAAATTCCCTGGATCATTGAAAGGAGAAATTGCTGGGATTGTTGAGTCTGTAGGAGCTGAGAGGGAATCTAACACAGCCTTGTCATTGCAATTGCTGGTGTACTGTACAAACTACTTATTATGATACAGGATCTTTTTTGAACATGTTTAAGCAGACATGGGCACTGTAAGATAAATTTGTATGTATGAACTTGAAGAGCAAAAGTAATCACATCTATTGATTGGAATATAGGTGAGTTGTGTTGCTCTTCTGGGCGTTGTTTTCTTTGATTTGCTTGAACTGTTCGAACTGCAGGACAGGTTAATTACATATAACAGAAAAGCTGTTTAATTGTCAGCTCCACAGCAGTCATGTTGAATACAACTTCCATAGTCAAAAGTAAACCACAAAGAAGAAGAAGAAACAATTGAACTCTAAAACACTGCTTGGAATCGTCGTCTAATCTTCACTGTGGGAACATCTGTGACAACTGGAAGAAGTAACACTGTTGTCTGGGCAGGGATCCACCATAAAACCCAAAAATACGGAGGTTCCAGTAATTATGGTTATCCAGATGAGGGCTATTTTGACAGAGTGAAGAAAGAACTAGCACTCGTTAATGTTATTTAAAGCGAGAGATTAATTGTTTCCAATGTGCAGCGTTCTGGAGAGGCATTAATATTTCAGGCTCCAGGCTTCCCTATGCAAAATTTTTGGGATAAAGCTGGTTAAAGTTATTGCTTAAACTTTAATTATGAAGCTAATATTCAGTGTAGGAGCTAATATTCATATTAACTCATTTTCCTTTGGCTTAAGTGTCACTGAACCATCGATATGTTCAGTCGGTATCATGACAAGGAATATGCAAACATGGGTTGCTCTATTTAAGAATTGCATTGTAATACACATTAAATACCGTAGCAGTGGTTCCCTTTCAATGCAATTCAAATTACTATTACCATAGAAGTATATAGAAATAATAATACAATTTCTTGAAAGGTTGTTGAGTAGAGAAGAAGATAATTATTGCTGTATGATGTGAATATGAAATCACTGCAGTGAAGTAAATTGAATAAATTAAAG

Ace file of the UniGene sp_v1.1_unigene10873

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF221 domain containing protein	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	82%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF221	IPR003864	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKM0

Fln msg: your sequence is longer than subject: 769 - 717

Fln protein: MATLGDIAVAGVINLLIALGFLLAFTFLRLQPMNDRVYFPKWYLKGSRKSPRHSRSAIGRFVNLDYKTYLRFLNWMPEALKMPESELIDHAGFDTVVYLRIYIVGLKIFVPLAVLACAILVPVNATGGTLVNLKKELVFSDIDKLSISNVQSGSQRFWAHLLMAYVFSAWTCFVLYVEYDKIASMRLHFLASQRRRPDQFSVLVRNVPPDTDETISEHVDHFFRVNHPDHYLTHQVVYNANKLAKLVKKKEKLKNWLDYYQIKYSRHPEKRPTTKEGFLGLWGERVDAIDFYTAEIDTLVTEIAEERERVLKDPEAIMPVAFVSFNTRWGAAVCAQTQQSKNPTIWLTEWAPEPRDVYWSNLAIPFVAIAIRKLVMGVTLFFLVFFFMIPIAAVQSLANLDGIEKVAPFLKPIIEVKIIKSFLQGFLPGLALKIFLILLPTILMVMSKIEGYAATSILERRAAAKYYYFMLVNVFLGSIITGTAFQQLHAFLHQSPTEIPKTIGVSIPMKATFFITYIMVDGWAGIAGEILRLKPLIIFHLKNMFLVKTEKDRENAMDPGSVGFPEALPQLQLYFLLGLVYAVVTPILLPFIVIFFGFAYFVYRHQVINVYNQEYESVAAFWPHVHSRIVAALVISQLLLLGLLSTKKAANSTPILLALPVLTIWFHKFCKSRFEPAFRRYPLEEAMAKDTLERATEPNLNLKGYLTNSYLHPIFKSEENEENEMGEWRDDDSLVLTKRHSKLNTPGASENSYIASPEYDEETYNYQV*

Protein Length: 770

Fln nts: GTCATCTATCTATACCTATTATGAAGTCTGATTGAGAATTTTCGGCGGAGAATTTACTGGGAAAGGAAGAAGAGGAAAGGAGAG_-_ATGGCGACTCTGGGAGATATTGCAGTGGCGGGAGTCATAAATCTTTTGATCGCCCTTGGGTTTCTGTTGGCATTTACGTTTCTGAGGTTGCAGCCCATGAACGATAGAGTTTACTTTCCCAAATGGTATCTTAAGGGGTCAAGAAAAAGCCCCCGGCACTCCAGATCAGCTATAGGTAGATTCGTAAATTTGGATTACAAAACGTACCTGCGATTCCTGAATTGGATGCCGGAGGCTCTCAAAATGCCGGAGTCGGAGCTCATTGATCACGCAGGCTTTGATACTGTTGTTTACCTTCGGATCTACATTGTGGGTCTGAAAATCTTTGTACCTTTGGCAGTTCTTGCTTGTGCAATCCTTGTTCCAGTAAATGCCACAGGAGGGACTTTAGTAAACTTAAAGAAAGAGTTGGTCTTTAGTGACATTGACAAACTTTCAATATCAAATGTCCAGAGTGGTTCTCAAAGGTTTTGGGCTCATCTATTAATGGCGTATGTGTTTTCAGCATGGACATGTTTTGTGCTTTACGTAGAGTATGACAAAATAGCAAGCATGAGGCTGCATTTCTTGGCTTCACAACGTCGTCGTCCCGATCAATTCAGTGTCCTAGTCAGAAATGTGCCTCCAGATACCGATGAGACAATTAGTGAGCATGTTGATCACTTTTTTCGAGTTAACCATCCTGATCACTACCTCACTCATCAGGTTGTCTACAATGCAAATAAGCTTGCTAAGCTTGTTAAGAAGAAGGAGAAACTCAAAAACTGGCTTGATTACTACCAGATCAAGTATTCAAGACATCCTGAAAAGAGGCCCACAACAAAGGAAGGTTTTCTCGGTCTTTGGGGTGAAAGAGTGGATGCCATTGACTTTTACACAGCAGAAATTGACACTTTGGTTACGGAAATAGCAGAAGAACGAGAACGGGTACTGAAAGATCCTGAGGCAATCATGCCTGTTGCATTTGTTTCATTTAATACACGCTGGGGAGCTGCTGTTTGTGCACAAACACAACAAAGCAAGAACCCAACAATTTGGTTAACAGAGTGGGCCCCTGAGCCTCGTGATGTATACTGGAGCAATCTGGCCATTCCATTTGTTGCAATCGCAATTCGGAAACTAGTCATGGGTGTTACACTCTTTTTCCTTGTATTTTTCTTCATGATCCCAATTGCAGCAGTCCAGTCATTGGCCAACCTTGATGGAATTGAGAAGGTTGCTCCCTTCCTGAAACCAATAATAGAAGTGAAAATTATCAAGTCATTTCTTCAAGGATTTCTACCAGGGTTGGCTTTGAAGATATTTCTTATTTTACTTCCTACTATCTTGATGGTCATGTCAAAAATTGAAGGTTATGCAGCAACATCTATACTTGAAAGGAGAGCTGCTGCAAAGTATTATTACTTTATGCTGGTGAATGTATTTCTTGGAAGTATAATTACTGGAACAGCATTTCAACAGCTTCATGCTTTTCTTCATCAATCTCCAACAGAGATACCAAAGACTATTGGAGTTTCAATACCAATGAAAGCTACCTTTTTCATCACTTATATCATGGTTGATGGATGGGCTGGCATTGCTGGTGAAATTCTCCGATTGAAGCCGTTAATCATTTTTCATCTGAAGAACATGTTTTTGGTGAAGACTGAGAAGGATAGGGAGAATGCCATGGATCCTGGCAGTGTCGGTTTCCCAGAAGCACTTCCTCAACTTCAACTATACTTTCTTCTTGGACTTGTGTATGCAGTGGTCACGCCAATACTTCTGCCTTTCATAGTCATCTTTTTTGGATTTGCATACTTTGTGTATCGACATCAGGTTATCAATGTGTATAATCAGGAGTATGAGAGTGTAGCAGCATTTTGGCCTCATGTTCATAGTCGTATAGTTGCTGCATTAGTAATATCACAGCTACTACTACTTGGTCTGCTAAGCACTAAAAAAGCAGCTAACTCCACGCCTATACTTTTAGCCCTTCCAGTGTTGACAATTTGGTTTCACAAGTTTTGTAAAAGTCGTTTTGAGCCTGCTTTCCGAAGATATCCACTGGAGGAAGCCATGGCAAAGGATACTTTGGAGCGGGCCACAGAACCAAACCTTAATCTCAAAGGATACCTAACTAATTCGTACTTGCATCCTATCTTTAAGAGTGAAGAGAACGAGGAGAATGAAATGGGAGAATGGAGAGACGATGATAGTTTGGTACTGACAAAGCGTCATTCAAAACTGAACACCCCTGGAGCTAGTGAGAACAGCTACATTGCCTCACCAGAGTATGATGAGGAGACCTATAACTACCAAGTCTGA___TTATGCTTTCGTATTTAATCCTTCAGAGAAGGAGCTTAGAAATTCCCTGGATCATTGAAAGGAGAAATTGCTGGGATTGTTGAGTCTGTAGGAGCTGAGAGGGAATCTAACACAGCCTTGTCATTGCAATTGCTGGTGTACTGTACAAACTACTTATTATGATACAGGATCTTTTTTGAACATGTTTAAGCAGACATGGGCACTGTAAGATAAATTTGTATGTATGAACTTGAAGAGCAAAAGTAATCACATCTATTGATTGGAATATAGGTGAGTTGTGTTGCTCTTCTGGGCGTTGTTTTCTTTGATTTGCTTGAACTGTTCGAACTGCAGGACAGGTTAATTACATATAACAGAAAAGCTGTTTAATTGTCAGCTCCACAGCAGTCATGTTGAATACAACTTCCATAGTCAAAAGTAAACCACAAAGAAGAAGAAGAAACAATTGAACTCTAAAACACTGCTTGGAATCGTCGTCTAATCTTCACTGTGGGAACATCTGTGACAACTGGAAGAAGTAACACTGTTGTCTGGGCAGGGATCCACCATAAAACCCAAAAATACGGAGGTTCCAGTAATTATGGTTATCCAGATGAGGGCTATTTTGACAGAGTGAAGAAAGAACTAGCACTCGTTAATGTTATTTAAAGCGAGAGATTAATTGTTTCCAATGTGCAGCGTTCTGGAGAGGCATTAATATTTCAGGCTCCAGGCTTCCCTATGCAAAATTTTTGGGATAAAGCTGGTTAAAGTTATTGCTTAAACTTTAATTATGAAGCTAATATTCAGTGTAGGAGCTAATATTCATATTAACTCATTTTCCTTTGGCTTAAGTGTCACTGAACCATCGATATGTTCAGTCGGTATCATGACAAGGAATATGCAAACATGGGTTGCTCTATTTAAGAATTGCATTGTAATACACATTAAATACCGTAGCAGTGGTTCCCTTTCAATGCAATTCAAATTACTATTACCATAGAAGTATATAGAAATAATAATACAATTTCTTGAAAGGTTGTTGAGTAGAGAAGAAGATAATTATTGCTGTATGATGTGAATATGAAATCACTGCAGTGAAGTAAATTGAATAAATTAAAG

Fln Alignment:

sp_v1.1_unigene10873___INLLIALGFLLAFTFLRLQPMNDRVYFPKWYLKGSRKSPRHSRSAIGRFVNLDYKTYLRFLNWMPEALKMPESELIDHAGFDTVVYLRIYIVGLKIFVPLAVLACAILVPVNATGGTLVNLK-KELVFSDIDKLSISNVQSGSQRFWAHLLMAYVFSAWTCFVLYVEYDKIASMRLHFLASQRRRPDQFSVLVRNVPPDTDETISEHVDHFFRVNHPDHYLTHQVVYXXXXXXXXXXXXXXXXXWLDYYQIKYSRHPEKRPTTKEGFLGLWGERVDAIDFYTAEIDTLVTEIAEERERVLKDPEAIMPVAFVSFNTRWGAAVCAQTQQSKNPTIWLTEWAPEPRDVYWSNLAIPFVAIAIRKLVMGVTLFFLVFFFMIPIAAVQSLANLDGIEKVAPFLKPIIEVKIIKSFLQGFLPGLALKIFLILLPTILMVMSKIEGYAATSILERRAAAKYYYFMLVNVFLGSIITGTAFQQLHAFLHQSPTEIPKTIGVSIPMKATFFITYIMVDGWAGIAGEILRLKPLIIFHLKNMFLVKTEKDRENAMDPGSVGFPEAXXXXXXXXXXXXVYAVVTPILLPFIVIFFGFAYFVYRHQVINVYNQEYESVAAFWPHVHSRIVAALVISQXXXXXXXSTKKAANSTPILLALPVLTIWFHKFCKSRFEPAFRRYPLEEAMAKD-TLERATEPNLNLKGYLTNSYLHP
B8LKM0_______________INTGLCVLLLSFYSVLRKQPDNVYVYAPRRVAEEQAK--REGPFSLERLVPSP--------GWIVRAWRLSEDEFLSAAGFDAFVFLRIFIFSIRIFSIAGIIGVFVLLPLNYTGNQLRTVDWADIPNQSLDLFTIANVQDGSKRLWVHFCAVYLISGAACCLLYLEYKGIAEKRFSYFNSSPPQPNHFTILVRGIPKSDQHSMSETVEEFFTLYHPSTYFSHQMVYHSNRVQSLMHEAEKLYKRILHLKTKPRL---QRKSHREGFLGLFGAKVDPVDLYTKKLEDVEENVKLEQSTFYQN-EKELPAAFVSFRSRYGAAMASQLVQSSNPLLWVTEPAPEPSDIYWPFLSAPYIQLWISKFVVVVAVFFLTILFLVPVTFVQGLTQLTELESFLPFLKKVLKLTIVSDIITGYLPSLILQMFQYFVPPIMLLFSAMRGHISNSGKMKSACIMVLSFTIWNVFFATVLSGSVISQINTFL-SDPKDIPRQLAVVVPGQATFFITYVLTSGWTGLSLEIARIFPLI----GNFFIRHFSNITEDADCAPSFPYHRDIPKVLLFGLLGFTYSLLAPLIMPFLLVYFFVGYIFYRNQMLKVYSPRFESAGQFWPIVHNCTIFSLVFMQIIAIGIFGVKKVPFASGWVIPMTVITLLFNDYCRKRFLPIFNRYPAEILIKRDGEDERNPQMMASFLDSLVNAYRDP

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
338		83		16	0.994512
922		88		11	0.923564
1224		11		88	0.923564
1225		88		11	0.923564
1239	11			88	0.923564
2494	6		93		0.999453
3047			85	14	0.994477
3048		85	14		0.994477
3050	85		14		0.994477
3090	87		12		0.993502
3092		12		87	0.993502
3093	87		12		0.993502
3094	87			12	0.993502
3095			12	87	0.993502
3097		12		87	0.993502
3098		12		87	0.993502
3101	87			12	0.993502
3105			16	83	0.999994
3107		83	16		0.999994
3108	83			16	0.999994
3110	16		75	8	0.999997
3111		83		16	0.999994
3114		83	16		0.999994
3115		83	16		0.999994
3118	83		16		0.999994
3123	83	16			0.999994
3265		84		15	0.999986
3282	84			15	0.999986
3285		83		16	0.999991
3368	16	83			0.999991

SSRs (tot: 1)

Start position	End position	Sequence	Length
2819	2832	AAG AAG AAG AAG AA	14

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain