SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10807

Length: 892 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10807

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative FAS1 n=2 Tax=Oryza sativa Japonica Group RepID=Q5N8N5_ORYSJ	-	-	8.0e-21	45%
FL-Next	tr=Putative FAS1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	45%
Blast2go	chromatin assembly factor subunit	-	-	6.54528e-21	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	trichome differentiation	GO:0010026	Biological Process	6.54528e-21	58%
Blast2go	positive regulation of cell cycle	GO:0045787	Biological Process	6.54528e-21	58%
Blast2go	double-strand break repair via homologous recombination	GO:0000724	Biological Process	6.54528e-21	58%
Blast2go	heterochromatin assembly	GO:0031507	Biological Process	6.54528e-21	58%
Blast2go	pollen development	GO:0009555	Biological Process	6.54528e-21	58%
Blast2go	regulation of meristem structural organization	GO:0009934	Biological Process	6.54528e-21	58%
Blast2go	nucleosome assembly	GO:0006334	Biological Process	6.54528e-21	58%
Blast2go	cell proliferation	GO:0008283	Biological Process	6.54528e-21	58%
Blast2go	chromatin assembly complex	GO:0005678	Cellular Component	6.54528e-21	58%

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
248		20		80	0.995493
327		75		25	0.996473
387		75		25	0.996473
439	33		50	16	1.0
441		83	16		0.994512
445		16	83		0.994512
446	83			16	0.994512
452		16	83		0.994512
454			83	16	0.994512
455		16	83		0.994512
460		50		50	1.0
518			50	50	1.0
557			12	87	0.992554
558			87	12	0.992554
593		10		90	0.90298
598	90		10		0.90298
600	90			10	0.90298
601	10		90		0.90298
633	12			87	0.992554
659		14		85	0.993533
664	71	28			1.0
665		28	71		1.0
712		16		83	0.994512
789	75		25		0.996473
796		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain