SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10805

Length: 2902 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene10805
ATGGGGAAACCACGTGTGACGTTGGCTGTGATTTGAGAGAAGTTTGATATATTTATCGGCGAGTCAGAGGAGAGTGACCCCTTTGTAGAGGGCAATTCATCCCATAATCGCTGCATCTGATCGAAAGCGAAATAACAGAACAGCCCCAACAATGTCGGCGGCGAGCAAGGCCGAGGAGAATGCTGGTGCAATCGTGTACGAAGTGCTGGGGCGCAGAGCGCTGGATGTGGACACCACTATTATCGAGTACATAATAAACGTCCTCAAGGATGAATCCTTCGACTTCGGCGTCAAGGGAGAGGGCGCCTATCAAGCTGTGGGTGACCTCCTTGTCGATTCCGGATGTGTCGACGATGAACCAGAGGCTCGCCTGGTTTGTGGCAAACTGTCGGAAAAAATTGGGAGACATGAACAAACAGGAAAGAAGGAAATTGTTCGAAGTCTTAAAACCCCTGTTCGGATGAATGATGGATTGTGTCAAGAGGAACCTCCTCCTAAGAAGGCTGAAATAGAGGATGGTCCTCCTATGTCAGAGCGTGATCGTGCTAAGCTGGAACGAAGGAGGAGGAAGGATGAACGCCAAAGAGAGTTAGCATATGAGTCGCACTTGGAAGAAATGAAAGCATCATTAGCAGGGATGCCTGTAGCACATGTTCATCATGGAAATGGGGATGAAGGATCGACTGTGAAGGACATTCACATGACGAATTTCAACATTTCTGTTGGAGGTCGGGAGCTCATTAAGGATGGTTCAATTACTTTGTCATATGGCAGGCACTATGGTCTGATTGGAAGGAATGGTACAGGAAAAACAACACTACTACGGCATATGGCCCTGCATGCAATTGATGGTATCCCCAAGTTCTGCCAAATTTTACACGTAGAGCAAGAGGTAGTTGGCGATGATATTACTGCACTCCAGTGTGTTCTAAACTCTGACGTGGAGAGAACTCAACTCTTGGAGGAAGAAGCTAGATTGGTGGCACAGCAGAGAGATGTTGACAAGGATGTTGCTACTGGAACGGGTGATTTGAAGGTCAATGGAGCCACTGAGGATAAGGATACATCCGAGAGGCTTCAACAGATATATAAAAGGCTTGAATATATTGATGCTTATTCTGCGGAGTCTCGCGCAGCGTCTATTCTTGCAGGACTTAGTTTCACTCCAGATATGCAACAAAAACCGACAAAGGCCTTTTCTGGAGGGTGGCGTATGAGGATTGCTCTTGCACGTGCTCTTTTTATAGAACCTGACTTGCTTTTACTTGACGAACCCACTAATCACCTTGATCTTCATGCAGTTCTATGGCTGGAATCATATCTTGTGAAATGGCCAAAAACATTTATTGTTGTGTCACATGCTAGAGAATTCTTGAATACGGTGGTTACAGATATTTTACATTTACATGGGCAAAAGCTAATAAGTTACAAGGGTGACTATGATACATTTGAGAGAACTCGAGATGAACAACTGCGCAATCAACAAAAAGCTTTTGAGTCAAATGAACGCACAAAGGCTCATATGCAGGCTTTCATTGATAAGTTCCGTTACAATGCAAAAAGAGCTTCACTTGTTCAGTCAAGAATCAAGGCTTTGGATCGCATTGGTCATATGGATGCTGTTGTCAACGATCCAGACTATAAATTTGAGTTTCCCACTCCGGATGATAGACCAAGTGCTCCGATTATCAGTTTCAGTGATGCATCATTTGGATACCCAGGGGGACCTCTATTGTTCAAGAACCTGAATTTTGGTATAGATCTTGACAGTCGTCTATCGATGGTTGGTCCAAATGGTATTGGCAAGTCAACTTTGCTAAAGTTAATTTCAGGGGAGTTACAGCCAAGCTCTGGTACAGTTTTCCGATCAGCAAAGGTTCGAATGGCTGTCTTTAGTCAGCACCATGTTGATGGGCTTGATTTGTCATCTAATCCTTTGTTGTATATGATGCGGTGCTTCCCTGGTGTCTTAGAACAAAAGCTAAGGGCACATTTAGGGTCGTTTGGCATCACAGGGAACCTTGCACTTCAACCCATGTATACATTGTCAGGTGGTCAGAAAAGTCGGGTAGCTTTTGCCAAAATTACCTTCAATAAACCTCATATTCTTCTGTTGGATGAGCCTTCAAACCATCTTGATCTAGATGCTGTCGAGGCACTTATTCAAGGACTCGTTCTCTTCCAAGGAGGGGTTTTAATGGTTAGTCATGATGAACATCTAATTTCTGGAAGTGTTGATCAATTATGGGTGGTATCTCAAGGAAGAGCAACACCTTTTAATGGAACATTTCAGGATTATAAAAAGACCCTCAAGGCGGCATAGCGAAAGGCTTAGCTGCAATGATATTCTATTTCCTTCAAAATATTTCATCCATCGTGTCAAGCAGATTTACATGTAAAGTCTACACATCTTTCAATCCAGATACAAAGCCCCGTGGGGAAGTCAACACAAATATAAGCAATTGATCCATTATTTTCATTCTTCAATTTGAATGCTTTCAAAATTTTATGTTGTCTTCTTTTTATATGTAATATCAGCTCCCAGATGATAATATTAATTACCAGCATCTTATTGGTTTTTCACTCTTAGGGGACTGTGGATGAGTTACATGTTGTCTCCAGCAAGAATGGTTTACATTTATAGTCTATAGATAACTAATAAAAACATTAGGCAATTCAAATGTCTAAATTTTAATATTAAGGTGTTTCCTTCATGGTTATTCGTCCATTATGAAGGAAGACCAAAACCACAGCTGAAACAGAGTGTGGATGTAAGTATAGAACTTAAGTATTGAAGAGTAGGCTGGGGGAAAAGGTATCTGGATGAATTATACCATGATGTATATGCCTTATCATCGGACGTTTTGCGAGTATCCATGATACTAGAATGCTTAACATAGTT

Ace file of the UniGene sp_v1.1_unigene10805

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ABC transporter family protein; K06158 ATP-binding cassette, sub-family F, member 3	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	abc transporter-related protein	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	organic phosphonate transmembrane-transporting ATPase activity	GO:0015416	Molecular Function	82%
Blast2go	mitochondrion	GO:0005739	Cellular Component	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPV8

Fln msg:

Fln protein: MSAASKAEENAGAIVYEVLGRRALDVDTTIIEYIINVLKDESFDFGVKGEGAYQAVGDLLVDSGCVDDEPEARLVCGKLSEKIGRHEQTGKKEIVRSLKTPVRMNDGLCQEEPPPKKAEIEDGPPMSERDRAKLERRRRKDERQRELAYESHLEEMKASLAGMPVAHVHHGNGDEGSTVKDIHMTNFNISVGGRELIKDGSITLSYGRHYGLIGRNGTGKTTLLRHMALHAIDGIPKFCQILHVEQEVVGDDITALQCVLNSDVERTQLLEEEARLVAQQRDVDKDVATGTGDLKVNGATEDKDTSERLQQIYKRLEYIDAYSAESRAASILAGLSFTPDMQQKPTKAFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVVTDILHLHGQKLISYKGDYDTFERTRDEQLRNQQKAFESNERTKAHMQAFIDKFRYNAKRASLVQSRIKALDRIGHMDAVVNDPDYKFEFPTPDDRPSAPIISFSDASFGYPGGPLLFKNLNFGIDLDSRLSMVGPNGIGKSTLLKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVLEQKLRAHLGSFGITGNLALQPMYTLSGGQKSRVAFAKITFNKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDQLWVVSQGRATPFNGTFQDYKKTLKAA*

Protein Length: 725

Fln nts: ATGGGGAAACCACGTGTGACGTTGGCTGTGATTTGAGAGAAGTTTGATATATTTATCGGCGAGTCAGAGGAGAGTGACCCCTTTGTAGAGGGCAATTCATCCCATAATCGCTGCATCTGATCGAAAGCGAAATAACAGAACAGCCCCAACA_-_ATGTCGGCGGCGAGCAAGGCCGAGGAGAATGCTGGTGCAATCGTGTACGAAGTGCTGGGGCGCAGAGCGCTGGATGTGGACACCACTATTATCGAGTACATAATAAACGTCCTCAAGGATGAATCCTTCGACTTCGGCGTCAAGGGAGAGGGCGCCTATCAAGCTGTGGGTGACCTCCTTGTCGATTCCGGATGTGTCGACGATGAACCAGAGGCTCGCCTGGTTTGTGGCAAACTGTCGGAAAAAATTGGGAGACATGAACAAACAGGAAAGAAGGAAATTGTTCGAAGTCTTAAAACCCCTGTTCGGATGAATGATGGATTGTGTCAAGAGGAACCTCCTCCTAAGAAGGCTGAAATAGAGGATGGTCCTCCTATGTCAGAGCGTGATCGTGCTAAGCTGGAACGAAGGAGGAGGAAGGATGAACGCCAAAGAGAGTTAGCATATGAGTCGCACTTGGAAGAAATGAAAGCATCATTAGCAGGGATGCCTGTAGCACATGTTCATCATGGAAATGGGGATGAAGGATCGACTGTGAAGGACATTCACATGACGAATTTCAACATTTCTGTTGGAGGTCGGGAGCTCATTAAGGATGGTTCAATTACTTTGTCATATGGCAGGCACTATGGTCTGATTGGAAGGAATGGTACAGGAAAAACAACACTACTACGGCATATGGCCCTGCATGCAATTGATGGTATCCCCAAGTTCTGCCAAATTTTACACGTAGAGCAAGAGGTAGTTGGCGATGATATTACTGCACTCCAGTGTGTTCTAAACTCTGACGTGGAGAGAACTCAACTCTTGGAGGAAGAAGCTAGATTGGTGGCACAGCAGAGAGATGTTGACAAGGATGTTGCTACTGGAACGGGTGATTTGAAGGTCAATGGAGCCACTGAGGATAAGGATACATCCGAGAGGCTTCAACAGATATATAAAAGGCTTGAATATATTGATGCTTATTCTGCGGAGTCTCGCGCAGCGTCTATTCTTGCAGGACTTAGTTTCACTCCAGATATGCAACAAAAACCGACAAAGGCCTTTTCTGGAGGGTGGCGTATGAGGATTGCTCTTGCACGTGCTCTTTTTATAGAACCTGACTTGCTTTTACTTGACGAACCCACTAATCACCTTGATCTTCATGCAGTTCTATGGCTGGAATCATATCTTGTGAAATGGCCAAAAACATTTATTGTTGTGTCACATGCTAGAGAATTCTTGAATACGGTGGTTACAGATATTTTACATTTACATGGGCAAAAGCTAATAAGTTACAAGGGTGACTATGATACATTTGAGAGAACTCGAGATGAACAACTGCGCAATCAACAAAAAGCTTTTGAGTCAAATGAACGCACAAAGGCTCATATGCAGGCTTTCATTGATAAGTTCCGTTACAATGCAAAAAGAGCTTCACTTGTTCAGTCAAGAATCAAGGCTTTGGATCGCATTGGTCATATGGATGCTGTTGTCAACGATCCAGACTATAAATTTGAGTTTCCCACTCCGGATGATAGACCAAGTGCTCCGATTATCAGTTTCAGTGATGCATCATTTGGATACCCAGGGGGACCTCTATTGTTCAAGAACCTGAATTTTGGTATAGATCTTGACAGTCGTCTATCGATGGTTGGTCCAAATGGTATTGGCAAGTCAACTTTGCTAAAGTTAATTTCAGGGGAGTTACAGCCAAGCTCTGGTACAGTTTTCCGATCAGCAAAGGTTCGAATGGCTGTCTTTAGTCAGCACCATGTTGATGGGCTTGATTTGTCATCTAATCCTTTGTTGTATATGATGCGGTGCTTCCCTGGTGTCTTAGAACAAAAGCTAAGGGCACATTTAGGGTCGTTTGGCATCACAGGGAACCTTGCACTTCAACCCATGTATACATTGTCAGGTGGTCAGAAAAGTCGGGTAGCTTTTGCCAAAATTACCTTCAATAAACCTCATATTCTTCTGTTGGATGAGCCTTCAAACCATCTTGATCTAGATGCTGTCGAGGCACTTATTCAAGGACTCGTTCTCTTCCAAGGAGGGGTTTTAATGGTTAGTCATGATGAACATCTAATTTCTGGAAGTGTTGATCAATTATGGGTGGTATCTCAAGGAAGAGCAACACCTTTTAATGGAACATTTCAGGATTATAAAAAGACCCTCAAGGCGGCATAG___CGAAAGGCTTAGCTGCAATGATATTCTATTTCCTTCAAAATATTTCATCCATCGTGTCAAGCAGATTTACATGTAAAGTCTACACATCTTTCAATCCAGATACAAAGCCCCGTGGGGAAGTCAACACAAATATAAGCAATTGATCCATTATTTTCATTCTTCAATTTGAATGCTTTCAAAATTTTATGTTGTCTTCTTTTTATATGTAATATCAGCTCCCAGATGATAATATTAATTACCAGCATCTTATTGGTTTTTCACTCTTAGGGGACTGTGGATGAGTTACATGTTGTCTCCAGCAAGAATGGTTTACATTTATAGTCTATAGATAACTAATAAAAACATTAGGCAATTCAAATGTCTAAATTTTAATATTAAGGTGTTTCCTTCATGGTTATTCGTCCATTATGAAGGAAGACCAAAACCACAGCTGAAACAGAGTGTGGATGTAAGTATAGAACTTAAGTATTGAAGAGTAGGCTGGGGGAAAAGGTATCTGGATGAATTATACCATGATGTATATGCCTTATCATCGGACGTTTTGCGAGTATCCATGATACTAGAATGCTTAACATAGTT

Fln Alignment:

sp_v1.1_unigene10805___GNGDEGSTVKDIHMTNFNISVGGRELIKDGSITLSYGRHYGLIGRNGTGKTTLLRHMALHAIDGIPKFCQILHVEQEVVGDDITALQCVLNSDVERTQLLEEEARLVAQQRDVDKDVATGTGDLKVNGATEDKDTSERLQQIYKRLEYIDAYSAESRAASILAGLSFTPDMQQKPTKAFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVVTDILHLHGQKLISYKGDYDTFERTRDEQLRNQQKAFESNER---------TKAHMQAFIDKFRYNA-KRASLVQSRIKALDRIGH-MDAVVNDPDY--KFEFPTPDDRPSAPIISFSDASFGYPG-GPLLFKNLNFGIDLDSRLSMVGPNGIGKSTLLKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFP---GVLEQK-LRAHLGSFGITGNLALQPMYTLSGGQKSRVAFAKITFNKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVD-----QLWVVSQGRATPFNGTFQDY
B8LPV8_______________GDDTADANVKDIKVDSFSVSARGKELLKNASVKISHGKRYGLVGPNGKGKSTLLKLLAWRKIP-VPKNIDVLLVEQEVVGDDRTALAAVVSANEELVKLRQEAQRL----QDLSLE----------DGVDDEMESGEKLAEVYEKLQEIGSDAAEAQASKILAGLGFTKSMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLGRWKKTLVVVSHDRDFLNSVCTDIIHLHDEKLHFYRGNFDAFESGYEQKRKETNKKFEVYEKQLKAAKRSGSRAQQEKVKDRAKFAANKETAKSKGKGKTVDDDEEPVEAPKRWRDYSVEFHFPEPTEL-TPPLLQLIEVSFSYPGREDFRLSNVDVGIDMGTRVAIIGPNGAGKSTLLNLLAGDLQPSEGEVRRSQKLRIGRYSQHFVDLLTMEETPVQYLLRLHPEQEGFSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKSRVVFTSISMSKPHILLLDEPTNHLDMQSIDALGDALEEFTGGVVLVSHDSRLISRVCEDEEKSETWVVEDGAVRKFPGTFEEY

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
511		13		86	0.999973
668			85	14	0.993533
669			85	14	0.993533
670	85		14		0.993533
671	85		14		0.993533
674	14		85		0.993533
675		14	85		0.993533
676		16	83		0.994512
677		14	85		0.993533
679			14	85	0.993533
681	85		14		0.993533
682	85		14		0.993533
684	14		85		0.993533
685	85	14			0.993533
688			85	14	0.993533
690		85		14	0.993533
694			83	16	0.994512
695	83	16			0.994512
697	16		83		0.994512
700	16	83			0.994512
701	83	16			0.994512
702		16		83	0.994512
704		80	20		0.995493
706	20	80			0.995493
707	80			20	0.995493
709			80	20	0.995493
710	80			20	0.995493
711		80	20		0.995493
713	80			20	0.995493
716	20			80	0.995493
717			20	80	0.995493
718	20	80			0.995493
719	80			20	0.995493
818	57	14			1.0
819	14	85			0.993533
1028	88		11		0.923564
1072	88		11		0.923564
2721	41			50	1.0
2735		50		50	1.0
2784	57		42		1.0
2831			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain