SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10797

Length: 1057 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10797

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM34_MARPO	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	protein	-	-	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	70%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	70%
Blast2go	ATP binding	GO:0005524	Molecular Function	70%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	70%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	70%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	70%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	70%
Blast2go	Protein kinase-like domain	IPR011009	-	70%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	70%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUW8

Fln msg: your sequence is shorter than subject: 306 - 465

Fln protein: RRDLGCHSILSRLHHRCLVKLEGFCHEAGEQILVYDFMKNGNLNDLLRGEYQKEILSWSKRIEILLSVAQGLDYLHSFSEPPVIHRDIKPSNILLDDHFNAKLSDFGISKSAAELFNTHISTGPAGTFGYLDPQYFLRQQLTPASDVYSFGIVLLVLVSGQRAIDHNRTDDFNLAEWVKVKFQEGDMKSIVDPNLKDDFNREDARTVTELALNCAAFDMSGRPSMKEVVSVLESLLKKHNASQSCGSYIIDSKVSAKSFPPSTMHSASNEAHEVTPSISRSFSTSILCGVLQRQVYNYRRLSTFN*

Protein Length: 307

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTTAGTAGGTTGCATCATCGCTGTCTTGTGAAGCTTGAAGGCTTTTGTCATGAAGCTGGAGAACAGATCCTGGTGTACGATTTCATGAAAAATGGCAACCTAAATGATTTGCTTCGGGGGGAATACCAAAAGGAGATTTTAAGTTGGTCCAAACGTATTGAAATTCTACTCTCTGTTGCACAAGGACTAGATTATTTACACTCTTTTAGTGAACCTCCTGTGATACATAGGGATATCAAGCCAAGTAACATATTACTGGATGATCACTTCAATGCTAAATTATCAGATTTTGGCATCTCTAAGAGTGCGGCAGAACTCTTTAATACTCATATTTCTACTGGGCCAGCTGGCACCTTTGGGTATTTAGATCCACAATACTTCTTGAGACAGCAACTAACACCAGCAAGTGATGTGTACAGCTTTGGGATTGTTTTGCTTGTGCTTGTTTCAGGACAAAGGGCCATTGATCATAATCGCACAGATGACTTTAATCTTGCGGAATGGGTTAAGGTCAAGTTTCAGGAAGGTGATATGAAGTCAATTGTAGACCCAAATCTTAAAGATGATTTTAACCGTGAGGATGCTAGAACTGTGACAGAATTGGCTCTAAATTGTGCTGCATTTGATATGTCTGGCCGTCCATCCATGAAAGAGGTGGTATCTGTATTGGAGTCCTTGTTAAAGAAACATAATGCTTCCCAAAGCTGTGGCTCATATATTATTGACAGTAAGGTCTCTGCAAAAAGTTTTCCTCCATCAACCATGCATTCTGCAAGTAATGAAGCACATGAGGTTACCCCTAGCATTAGTAGAAGCTTCTCTACGAGCATATTGTGTGGTGTCTTACAAAGGCAAGTTTATAATTATAGAAGGCTATCTACATTTAATTAG___CGAGCATGTTTTGGCCCCAGATGTGTAGGAATCCTGTTAACCCTTCCAAAATGCACCAGTCCATTTAATTTCAAAATGTGTTATAGAGTATACGTGAACTCTTTATTACACTGCTATGTCATGAAAGTATAGTGCCTTG

Fln Alignment:

sp_v1.1_unigene10797___SILSRLHHRCLVKLEGFCHEAGEQILVYDFMKNGNLNDLL--RGEYQKEILSWSKRIEILLSVAQGLDYLHSFSEPPVIHRDIKPSNILLDDHFNAKLSDFGISKSAAELFNTHISTGPAGTFGYLDPQYFLRQQLTPASDVYSFGIVLLVLVSGQRAIDHNR-TDDFNLAEWVK-VKFQEGDMKSIVDPNLKDDFNREDARTVTELALNCAAFDMSGRPSMKEVVSVLESLLK-KHNASQSCGSYIIDS
A9NUW8_______________NFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLP---LPWSIRMKIALGAAKGLAFLHGGAERPVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPEGDNTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLELLTGRRSMDKNRPSGEHNLVAWARPYLMDKRKLYRLVDPRLEFNYSVKGAQRAAQIAHHCLSRDPKARPLMDDVVEALTPLLNLKDMASSSLHHQAVQS

SNPs (tot: 3)

Position	A %	C %	T %	Probability
709	90	10		0.90298
733		88	11	0.923564
757		14	85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain