SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10793

Length: 1197 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10793

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	short-chain dehydrogenase, putative (EC:1.1.1.102)	-	-	1.0e-28	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	protein	-	-	0.0	52%

Source	GOs	Term	Type	Identity
Blast2go	cellular metabolic process	GO:0044237	Biological Process	52%
Blast2go	binding	GO:0005488	Molecular Function	52%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	52%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ20

Fln msg: No stop codon before M and low homology subject,

Fln protein: MDSWLVIVICIPISIICFVIFGKKAGRRMPSLRGKHVVITGGSRGIGFAIAMEVLEEGGYVTLISNSSSEINDAISEIAQQGKYSLDEVCTKVADVGDYESISTAIKECYEWRPFDVVICNAGIARIGYMDEINIKDVDPVIRTNISGVVYTVHSSLPLMKQRSSKSNPASIVLMGSLASMHPCYGYGTYTATKHALKGLAECLRFELLPFNIRVTICCPGFAKTPLLPEGRANLLAKTPLQQEAQKRNSQNLESIHAIMRVIDFYNMDKLEEPQDIARATVQGIKKGSFLVVTSPIALFLTTFSRGVFPAESIWTTIIEIFIFAAVKLTMGTYLFKAFVFKTIRQHRCRTTP*

Protein Length: 355

Fln nts: ATGGGATACAGGAGTCGAATTTAACCCAAAAAAA_-_ATGGACTCATGGCTGGTAATAGTGATCTGTATACCTATCAGTATCATCTGTTTCGTGATCTTTGGGAAGAAAGCAGGCCGGAGGATGCCGAGTTTAAGAGGCAAACACGTTGTGATAACTGGAGGATCAAGGGGCATCGGCTTTGCTATTGCAATGGAGGTTCTTGAAGAGGGAGGATACGTGACCCTCATCTCTAACAGTTCTTCTGAAATAAATGACGCCATTTCAGAAATTGCTCAACAGGGGAAATATTCTCTGGATGAAGTTTGCACAAAGGTTGCAGATGTGGGGGACTATGAATCCATTTCAACAGCTATAAAGGAGTGTTACGAGTGGCGACCTTTTGACGTTGTTATCTGCAACGCAGGAATAGCTAGAATAGGCTACATGGATGAAATCAACATTAAAGATGTGGATCCCGTCATCCGCACTAATATCAGCGGGGTAGTCTACACCGTTCATTCTTCGTTGCCATTGATGAAACAACGCAGCAGCAAGTCAAATCCGGCATCCATTGTTCTCATGGGATCGCTGGCTTCTATGCATCCATGCTATGGTTATGGCACATACACAGCCACTAAGCATGCCCTTAAAGGACTGGCCGAGTGCCTAAGGTTTGAGCTGTTGCCATTCAACATTCGAGTGACTATTTGCTGTCCAGGCTTTGCAAAGACGCCTCTCCTACCAGAAGGTCGAGCGAATCTCCTTGCAAAGACGCCTCTCCAACAAGAAGCTCAGAAGAGAAACTCGCAAAATCTTGAAAGCATCCACGCGATCATGAGAGTAATAGACTTTTACAATATGGACAAACTGGAAGAGCCGCAGGACATTGCAAGAGCCACGGTCCAAGGGATAAAGAAGGGCTCGTTTCTGGTAGTAACAAGTCCCATAGCACTTTTCCTCACCACTTTTTCCCGTGGCGTGTTTCCAGCTGAATCAATATGGACGACAATAATAGAGATCTTTATCTTCGCTGCCGTGAAATTGACAATGGGCACATATTTATTCAAGGCTTTTGTCTTTAAAACTATTCGTCAACACCGATGCCGGACCACCCCATAATGGGGTTTGAGCGAGCATTTGGAATGCAAAAGAGCCATTCAGCTATGGCGATGTACATATTCCAATGTTTTCACAGAACTTCTGACCTTTTAATATATGTA

Fln Alignment:

sp_v1.1_unigene10793___GKKAGRRMPSLRGKHVVITGGSRGIGFAIAMEVLEEGGYVTLISNSSSEINDAISEIAQQGKYSLDEVCTKVADVGDYESISTAIKECYEWRPFDVVICNAGIARIGYMDEINIKDVDPVIRTNISGVVYTVHSSLPLMKQRSSKSNPASIVLMGSLASMHPCYGYGTYTATKHALKGLAECLRFELLPFNIRVTICCPGFAKTPLLPEGRANLLAKTPLQQEAQKRNSQNLESIHAIMRVIDFYNMDKLEEPQDIARATVQGIKKGSFLVVTSPI-ALFLTTFSRGVFPAESIWTTIIEI---FIFAAVKLTMGTYLFKAFV
A9NZ20_______________GRASALGTKSLEKKHVVITGGSSGIGFAMAQEVILQGGFVTLISRSYANLQAAVERLVKDLSCDPDRVLSKVADVSDHQAITQAIQEAFQWKPIDFLICNAGLTRGGQLENQPVEDMDLVIRTNLNGTVYPVHAALPLMKER-SKEHPGSIVFIGSQASLFVFYGHSVYTATKYAVKGLAESLKLELTPYDISVSLACPGFVDTPFL--------------DEAEKEKD---EDDIKLLKIVNLYDRKNVEIPKNVAKKVLEGAKQGTFLITTNIYPGLFVSTLARGFLPAESVGRCLLEMIMYFPFRALSLLGANDIHKAIL

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
381		50		50	1.0
443	33	66			1.0
454		33		66	1.0
455		33		66	1.0
456		33		66	1.0
472	33	66			1.0
522	50		50		1.0
525		50	50		1.0
543			50	50	1.0
576		50		50	1.0
586	50			50	1.0
596	66			33	0.997452
599		33	66		0.997452
602		33		66	1.0
618	33		66		0.997452
879	44		55		1.0
880	44		55		1.0
978	83			16	0.994512
1014	16	83			0.994512
1021		16		83	0.994512
1077	50	50			1.0
1087	75	25			0.996473
1105		25	25	50	0.995533
1148		75		25	0.996473
1154	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain