SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10789

Length: 1149 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10789

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to Protein kinase-like n=1 Tax=Vitis vinifera RepID=UPI0001986357	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	abc1 family protein	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	0.0	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ABC-1	IPR004147	-	0.0	86%
Blast2go	Protein kinase-like domain	IPR011009	-	0.0	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL04

Fln msg: your sequence is shorter than subject: 364 - 657

Fln protein: RRDLGCRDFGCIIDEVFENFEEEPVASGSIAQVHKATLKFQYPGQKVKPMIVAVKVRHPGVSEVIRRDFVIINWVAKLSSCLPALRWLRLEESVQQFAVFMLSQVDLSREAAHLNRFLYNFRRWKDVSFPKPLYPLVHPAVLVETYEQGESVARYVDQPEANHKFNRSLAHTGTHTLLKMLLVDNFIHADMHPGNILVRMGQSNPSSKRIFRSKPHVVFLDVGMTAELSRNDRLNILEFFKAVARRDGRTAAECTLKFSRYQSCPDPNAFIQEVESSFKFWGSAEGDVVHPSECMQELLEHVRRHKVNIDGNVCTVMVTTLVLEGWQRKLDPDFNVMNTLHTVLNRSDWAKSLSYTIEGLMAP*

Protein Length: 365

Fln nts: CGTCGTGACCTTGGCTGTCGTGATTTTGGTTGTATCATTGATGAAGTTTTTGAGAACTTTGAAGAGGAGCCCGTTGCTTCTGGCAGTATTGCCCAAGTGCATAAGGCTACTCTGAAATTTCAGTATCCTGGTCAGAAGGTAAAGCCTATGATTGTTGCGGTAAAAGTCAGACACCCTGGAGTTAGTGAAGTGATTCGGAGGGATTTTGTCATAATAAATTGGGTTGCAAAGCTTTCCAGTTGTTTGCCAGCATTGAGGTGGCTGAGACTTGAAGAAAGTGTACAACAATTTGCTGTCTTTATGTTGTCTCAAGTCGATCTTTCAAGAGAAGCTGCACACTTGAACCGTTTTCTTTACAATTTTCGCAGGTGGAAAGATGTGTCTTTTCCTAAGCCGTTGTACCCACTTGTACACCCGGCAGTTTTGGTGGAGACTTATGAACAAGGCGAGAGTGTGGCACGCTATGTTGATCAGCCAGAAGCAAACCATAAGTTTAATAGATCACTTGCTCACACTGGCACGCATACTCTCCTCAAGATGCTACTGGTGGATAATTTCATCCATGCAGATATGCATCCTGGAAATATTCTGGTTCGAATGGGACAGAGTAATCCTTCAAGCAAGCGGATTTTTCGATCGAAACCTCATGTAGTTTTCCTTGATGTGGGCATGACAGCAGAACTTTCGAGGAATGATCGGCTGAATATTTTGGAGTTCTTTAAAGCTGTTGCACGGAGGGATGGCCGGACAGCTGCAGAGTGTACACTGAAATTTTCAAGATACCAGAGCTGTCCAGATCCAAATGCCTTCATACAGGAAGTTGAGTCTTCATTCAAATTTTGGGGTTCAGCCGAAGGTGATGTAGTACATCCATCAGAGTGTATGCAAGAGTTGCTTGAACATGTGAGACGCCACAAAGTGAACATTGATGGGAATGTCTGCACTGTAATGGTGACAACATTGGTTCTTGAGGGCTGGCAGCGCAAGTTGGACCCTGATTTTAATGTTATGAACACCTTGCATACTGTTCTAAATAGATCTGATTGGGCCAAATCTCTTTCTTATACAATTGAAGGACTCATGGCCCCATAA___TTTTCATAAGAGCATGTTGGTCATGCTCTGTCAAAACATTTTGACTTTTCTTCACCC

Fln Alignment:

sp_v1.1_unigene10789___IDEVFENFEEEPVASGSIAQVHKATLKFQYPGQKVKPMIVAVKVRHPGVSEVIRRDFVIINWVAKLSSCLPALRWLRLEESVQQFAVFMLSQVDLSREAAHLNRFLYNFRRWKDVSFPKPLYPLVHPAVLVETYEQGESVARYVDQPEANHKFNRSLAHTGTHTLLKMLLVDNFIHADMHPGNILVRMGQSNPSSKRIFRSKPHVVFLDVGMTAELSRNDRLNILEFFKAVARRDGRTAAECTLKFSRYQSCPDPNAFIQEVESSFKFWGSAEGDVVHPSECMQELLEHVRRHKVNIDGNVCTVMVTTLVLEGWQRKLDPDFNVMNTLHTVLNRSDWAKSLSYTIEGLMAP
B8LL04_______________IDEIFEDFEEEPVASGSIAQVHKATLKFRYPGQKVKPMIVAVKVRHPGVSEVIRRDFVIINWVAKLSSCLPALRWLRLEESVQQFAVFMLSQVDLSREAAHLNRFLYNFRRWKDVSFPKPLYPLVHPAVLVETYEQGESVARYVDQPEGNYRFNRSLAHTGTHTLLKMLLVDNFIHADMHPGNILVRMGQSNASSKRLFQSRPHVVFLDVGMTAELSKNDRLNILEFFKAVAQRDGRTAAECTLKFSRYQSCPDPNAFIQEVESSFKYWGSPEGDVVHPAECMQELLEHVRHHKVNIDGNVCTVMVTTLVLEGWQRKLDPDFNVMNTLHTVLIRSDWAKSLSYTIEELMAP

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
955		11		77	0.968132
956		11	77	11	0.968132
958	77		11		0.968132
959	77		11		0.968132
960		11		88	0.923564
961			88	11	0.923564
964		11	88		0.923564
965	88			11	0.923564
968	88			11	0.923564
970	87			12	0.992554
971		11		88	0.923564
972	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain