SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10780

Length: 1118 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10780

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	VPS60.2; K12198 charged multivesicular body protein 5	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Snf7	IPR005024	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAQ9

Fln msg:

Fln protein: MMKRLFSFKKKKAAPPPPSVEEASEKMNKRGDVINEKIKKLDAELCIYKEQLKRTRPGPSQNAIKARAMRVLKQKKMYEGQRDMLYNQAFSLDQVSFASEGIKDAQHTIAAMRVGNKELTGTMKRLTIDDVDRVQEDIQDLAGYSSEMQESLVGSYTVPDHLDEEELMGELGGLENDMLSEIDEDQMPAYLQPEKAAESEADLKSPSASFVHGTPTSQSGSQGINEQDLPTTPKVSSIKL*

Protein Length: 242

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCGGGCAAACCAGACACCGATAACATTCCGTTACCAGCACAGTAGAGCAGAGGTGCAGGAGGCGAGCCTCAACATTATCTCATCGATACCGGTAGTACATTGTAGAGTTAGACTCAGGCAAAG_-_ATGATGAAGCGATTATTCAGTTTCAAGAAGAAGAAAGCGGCCCCTCCTCCTCCATCTGTGGAAGAGGCCTCTGAAAAGATGAACAAGAGAGGCGATGTGATTAATGAAAAGATCAAGAAATTGGACGCGGAGCTCTGCATATACAAAGAGCAGCTCAAGAGGACCCGACCGGGTCCTTCTCAGAACGCTATCAAAGCACGGGCTATGCGCGTCCTCAAGCAGAAAAAAATGTATGAAGGGCAGAGAGATATGCTTTACAATCAAGCTTTTAGCCTCGATCAAGTTTCATTTGCATCAGAGGGTATAAAAGATGCTCAACATACAATAGCAGCCATGAGAGTAGGAAATAAGGAGCTTACTGGAACAATGAAGCGATTGACGATAGATGATGTTGATAGAGTTCAAGAAGATATTCAAGATCTGGCTGGTTATAGCTCAGAGATGCAGGAGTCTTTGGTTGGAAGCTACACAGTGCCCGATCATTTGGATGAAGAAGAGCTAATGGGAGAGCTGGGTGGTTTGGAGAATGACATGCTCTCTGAAATTGACGAGGATCAAATGCCTGCTTATTTGCAACCTGAGAAAGCAGCCGAGTCTGAAGCAGATTTGAAATCACCATCTGCATCTTTTGTACATGGAACTCCAACATCTCAGTCTGGCAGCCAGGGTATAAATGAGCAGGATCTTCCTACAACGCCCAAAGTTTCCTCCATAAAGTTATAA___TTCACGTGGAGACTATTTTGTAGTAATTGTAATAATTGCAACGAGTGATTCTTATTACAAACTATTTTGTATATCAAAACTTTCATAATGTTTAATATGCCGGTATTGTAATTAAGTTAAATTAGAAAGAATGCATGATTGCATGGTTTCTTCTTAAAGGAAATTAAGTTAGAAAGAAATGTCATATTATAGTTTCCCCCATAGTTGTAATTATTTTCTGCCTTCGATGCATTCAATTTTGCAAAAAA

Fln Alignment:

sp_v1.1_unigene10780___SVEEASEKMNKRGDVINEKIKKLDAELCIYKEQLKRTRPGPSQNAIKARAMRVLKQKKMYEGQRDMLYNQAFSLDQVSFASEGIKDAQHTIAAMRVGNKELTGTMKRLTIDDVDRVQEDIQDLAGYSSEMQESLVGSYTVPDHXXXXXXXXXXXXXXXXXXSEIDEDQMPAYLQPEKAAESEADLKSPSASFVHGTPTSQSGSQGINEQDLPTTPKVSSIK
D5AAQ9_______________SVQDAAEGINKRGDTIDEKVKKLDIELARYKEQIKKTRPGPAQEAIKARAMRILKQKRMYEGQREMIYNQTFNLDQVSFATEGIKDAQNTMTALKSANKELKGSLKTMKIDDIDNMQDEMMNLMDISTEIQDSLGRSYSVPDDIDEDELMGELDALEADMSTETQTDGVPAYLQPDRESDLDSELNLPSAPSGHAT-VPQANPQTTDEFGLPTVPRASSLR

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
24	50	25	25		0.995533
26	25	50		25	0.995533
30		75	25		0.996473
73	75	25			1.0
75	75			25	1.0
76		25	75		1.0
80	25	75			1.0
81	75	25			1.0
82		25	75		1.0
83			75	25	1.0
84	75			25	1.0
90	75			25	1.0
91		25	75		1.0
92	25	75			1.0
376	66			33	0.997452
377	66		33		0.997452
378			33	66	0.997452
415		7		78	0.999974
553	91	8			0.999766
555	91			8	0.999807
556	91	8			0.999807
558	91			8	0.999807
559		4	8	86	0.999539
561		9		90	0.999842
562		9		90	0.999842
563		90		9	0.999842
564	90			9	0.999842
565	90		9		0.999842
567	90	9			0.999842
569		90	9		0.999842
571		9	90		0.999842
572	9		90		0.999842
575		9	90		0.999842
576	9		90		0.999842
598			81	18	1.0
715	50			50	1.0
1098	40		60		1.0
1108	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain