SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10735

Length: 2073 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene10735
CGTCGTGACCTTGGCTGTCACTCAACTTTGTCTGCTATAGGCTCTGGAAAATGGGGGGCGATGTGCATTTTGTGGATCAGGGTGCTCACATTACATTAGGTCGTGGCCTTGGCTGTCACCATATCAAAACCAGCGGGGATAATTACAGGCATACGTTATGGAGGGCTTGACAATTTGCTCGAAATTCTCAACAAAGAAACGAACAGAGGATACTGGGATCTCAATTGGAACGAGCCAGGAGGAAAGGATACGTTTGATGTGCCAAGTGCGATATTTTTTAAAGTAGTCGAGGCTAACAAGGATAAAGTCGAAGTCTCTTTCCTCAGGCCATACAATCCTTCAAGCAGTTGGAAGATGGTGCCACTAAATATAGACAAAAGGTTTGTTTTGCTTCGAGGGAGCAGTGGGTTTTACACCTATGCGATATATGAGCGTCCAACGGGGTGGCCAGATTTCAATCTCAATCAAACTCGTGTTACATTCAAATTGAGGAAAGACAGATTTCACTACATGGCACTTGCTGATAACAAGCAAAGATTGATGCCATCCCCAGATGATCGGATGCCAAACAGATGCAACATACTTGCATATCCTGAAGCAGTTTTTCTCTCAAATCCCGGGAACCCCAGCCTTCAAGGCGAGGTAGATGATAAGTACCAGTACTCATGTGACAATAGGGAGAACAGAGTCCATGGATGGATCAGCTTTGATCCCATGGTTGGGTTCTGGGTCATCACTCCTAGCGATGAATTTCGTAATGGAGGTCCAATAAAACAAAACTTGACATCTCATGTTGGGCCAACATCGCTTGCAATGTTTCATAGTGCTCATTATGCGGGTGAAGAGCTGTGTCCTAAGTTTCGTTCTGGAGAAGCGTGGCAAAAGGTTTTTGGCCCAGTCTTCATTTATCTTAATTCTTCATCAAGAGAGGCTCACCCATTCTCCTTGTGGCAAGATGCAAAGTTACAGATGATAAAGGAGGTACAAAGTTGGCCTTATGGGTGGCCTGAATCTCCATTATTTAGAAAGAGACCAGAACGAGGATATATTACTGGACAACTGTTAGTACATGATAAATATGCTGTTGAGGATGTTCACCCTGCTCGTTTTGCTTTTTTGGGATTGTCCACACCTGGGGAAAAGGGCTCTTGGCAAAAAGAGAGTAAGAGCTACCAATTTTGGAGTCAAGCTGATGAGAATGGGCTTTTCTCTATAGAAAATGTCTGCCCTGGTACCTACAATCTCTATGGTTGGGTGCCGGGTGTTCTTGGTGACTATATGAAAGAAGGCTCGATTAACATAAATTCAGGTTGTAGGATAGATGTTGGGATTTTGATCTATGAGCCCCCAAGAGATGGCCCTACTATATGGGAGATAGGTTTACCAGATCGCACTGCTGCAGAATTTTTCATTCCAGATCCCAAGCCTTGCCACATCAACAAACTGTTTCTCAATCATCCTGAAAGGTTCCGGCAATATGGCCTTTGGGAAAGATATTCTGAAATCTTCAAAGACAACGATTTGATATATACAGTTGGGACTAGTGACTGGAGAAGAGATTGGTTCTTTGCACACACATGCAGGATTGAAAATGATGGAAGCTTTCGTCCCGCAACATGGCAAATAAAATTCCAGCTAAGAGGTGTGGAACAAAACAGTCCTTATAAGCTTCGATTAGCAATTGCATCATCAACCAATGCAGCCATTCAGGTTCGATTCAATGATGCAAATATATATAAACCACATTTTGATACCATGCAATTTGGGAAAGATAATGCCATTGCTCGTCATGGCAACCACGGTTTGTACCATCTGTTTAACATTGATGTTTCTGGAAACTGGTTGGTGGAGGGTGAGAACACATTATACCTTACACAAAGAAAAGCCACTGGCCCTTTTACTGGGGTAATGTATGATTATCTCCGGTTGGAGAAAGTTTCTTCATAGACTAGAAGAAGAACAATTGAGTTTTCATATATTAAGAGAGAATTATTGTATATGATTTAATAATGAATTCGTATAAACATAGTTTACATTGTTTAAATTATTTGTTTAGGTATTACACAATGAATT

Ace file of the UniGene sp_v1.1_unigene10735

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	lyase, putative	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	75%

Source	InterPros	Term	Type	Identity
Blast2go	Galactose-binding domain-like	IPR008979	-	75%
Blast2go	Rhamnogalacturonate lyase	IPR010325	-	75%
Blast2go	Carbohydrate-binding-like fold	IPR013784	-	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNQ0

Fln msg: your sequence is longer than subject: 531 - 222

Fln protein: MVPLNIDKRFVLLRGSSGFYTYAIYERPTGWPDFNLNQTRVTFKLRKDRFHYMALADNKQRLMPSPDDRMPNRCNILAYPEAVFLSNPGNPSLQGEVDDKYQYSCDNRENRVHGWISFDPMVGFWVITPSDEFRNGGPIKQNLTSHVGPTSLAMFHSAHYAGEELCPKFRSGEAWQKVFGPVFIYLNSSSREAHPFSLWQDAKLQMIKEVQSWPYGWPESPLFRKRPERGYITGQLLVHDKYAVEDVHPARFAFLGLSTPGEKGSWQKESKSYQFWSQADENGLFSIENVCPGTYNLYGWVPGVLGDYMKEGSININSGCRIDVGILIYEPPRDGPTIWEIGLPDRTAAEFFIPDPKPCHINKLFLNHPERFRQYGLWERYSEIFKDNDLIYTVGTSDWRRDWFFAHTCRIENDGSFRPATWQIKFQLRGVEQNSPYKLRLAIASSTNAAIQVRFNDANIYKPHFDTMQFGKDNAIARHGNHGLYHLFNIDVSGNWLVEGENTLYLTQRKATGPFTGVMYDYLRLEKVSS*

Protein Length: 532

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTTGTCTGCTATAGGCTCTGGAAAATGGGGGGCGATGTGCATTTTGTGGATCAGGGTGCTCACATTACATTAGGTCGTGGCCTTGGCTGTCACCATATCAAAACCAGCGGGGATAATTACAGGCATACGTTATGGAGGGCTTGACAATTTGCTCGAAATTCTCAACAAAGAAACGAACAGAGGATACTGGGATCTCAATTGGAACGAGCCAGGAGGAAAGGATACGTTTGATGTGCCAAGTGCGATATTTTTTAAAGTAGTCGAGGCTAACAAGGATAAAGTCGAAGTCTCTTTCCTCAGGCCATACAATCCTTCAAGCAGTTGGAAG_-_ATGGTGCCACTAAATATAGACAAAAGGTTTGTTTTGCTTCGAGGGAGCAGTGGGTTTTACACCTATGCGATATATGAGCGTCCAACGGGGTGGCCAGATTTCAATCTCAATCAAACTCGTGTTACATTCAAATTGAGGAAAGACAGATTTCACTACATGGCACTTGCTGATAACAAGCAAAGATTGATGCCATCCCCAGATGATCGGATGCCAAACAGATGCAACATACTTGCATATCCTGAAGCAGTTTTTCTCTCAAATCCCGGGAACCCCAGCCTTCAAGGCGAGGTAGATGATAAGTACCAGTACTCATGTGACAATAGGGAGAACAGAGTCCATGGATGGATCAGCTTTGATCCCATGGTTGGGTTCTGGGTCATCACTCCTAGCGATGAATTTCGTAATGGAGGTCCAATAAAACAAAACTTGACATCTCATGTTGGGCCAACATCGCTTGCAATGTTTCATAGTGCTCATTATGCGGGTGAAGAGCTGTGTCCTAAGTTTCGTTCTGGAGAAGCGTGGCAAAAGGTTTTTGGCCCAGTCTTCATTTATCTTAATTCTTCATCAAGAGAGGCTCACCCATTCTCCTTGTGGCAAGATGCAAAGTTACAGATGATAAAGGAGGTACAAAGTTGGCCTTATGGGTGGCCTGAATCTCCATTATTTAGAAAGAGACCAGAACGAGGATATATTACTGGACAACTGTTAGTACATGATAAATATGCTGTTGAGGATGTTCACCCTGCTCGTTTTGCTTTTTTGGGATTGTCCACACCTGGGGAAAAGGGCTCTTGGCAAAAAGAGAGTAAGAGCTACCAATTTTGGAGTCAAGCTGATGAGAATGGGCTTTTCTCTATAGAAAATGTCTGCCCTGGTACCTACAATCTCTATGGTTGGGTGCCGGGTGTTCTTGGTGACTATATGAAAGAAGGCTCGATTAACATAAATTCAGGTTGTAGGATAGATGTTGGGATTTTGATCTATGAGCCCCCAAGAGATGGCCCTACTATATGGGAGATAGGTTTACCAGATCGCACTGCTGCAGAATTTTTCATTCCAGATCCCAAGCCTTGCCACATCAACAAACTGTTTCTCAATCATCCTGAAAGGTTCCGGCAATATGGCCTTTGGGAAAGATATTCTGAAATCTTCAAAGACAACGATTTGATATATACAGTTGGGACTAGTGACTGGAGAAGAGATTGGTTCTTTGCACACACATGCAGGATTGAAAATGATGGAAGCTTTCGTCCCGCAACATGGCAAATAAAATTCCAGCTAAGAGGTGTGGAACAAAACAGTCCTTATAAGCTTCGATTAGCAATTGCATCATCAACCAATGCAGCCATTCAGGTTCGATTCAATGATGCAAATATATATAAACCACATTTTGATACCATGCAATTTGGGAAAGATAATGCCATTGCTCGTCATGGCAACCACGGTTTGTACCATCTGTTTAACATTGATGTTTCTGGAAACTGGTTGGTGGAGGGTGAGAACACATTATACCTTACACAAAGAAAAGCCACTGGCCCTTTTACTGGGGTAATGTATGATTATCTCCGGTTGGAGAAAGTTTCTTCATAG___ACTAGAAGAAGAACAATTGAGTTTTCATATATTAAGAGAGAATTATTGTATATGATTTAATAATGAATTCGTATAAACATAGTTTACATTGTTTAAATTATTTGTTTAGGTATTACACAATGAATT

Fln Alignment:

sp_v1.1_unigene10735___MKEGSININSGCRIDVGILIYEPPRDGPTIWEIGLPDRTAAEFFIPDPKPCHINKLFLNHPERFRQYGLWERYSEIFKDNDLIYTVGTSDWRRDWFFAHTCRIENDGSFRPATWQIKFQLRGVEQNSPYKLRLAIASSTNAAIQVRFNDANIYKPHFDTMQFGKDNAIARHGNHGLYHLFNIDVSGNWLVEGENTLYLTQRKATGPFTGVMYDYLRLEKVSS
A9NNQ0_______________MKEGFINIYSGCRIDVGVLIYEPPRDGPTIWEIGIADRTAAEFFIPDPKPCHINKLFLNHPERFRQYGLWERYSEIFKDNDLIYTVGTSDWRRDWYFAHTCRIENDGSFRPATWQVKFQLRGMEQNSLYKLRLAIASSTNAAIQIRFNDENIYKPHFDTMQFGKDNAIARHGIHGLYHLFNIDVSGNWLVEGENTLYLTQRKVTSPFTGVMYDYLRLEKVSS

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
169			75	25	0.996473
267		80		20	0.995493
269	80	20			0.995493
785	25	75			0.996473
787			25	75	0.996473
789	75		25		0.996473
871		25		75	0.996473
872		75	25		0.996473
875	33		66		0.997452
876	66	33			0.997452
877		33	66		0.997452
878	66			33	0.997452
879	66			33	0.997452
881		66	33		0.997452
882		33	66		0.997452
885			66	33	0.997452
889	66			33	0.997452
890	66	33			0.997452
1474		20	80		0.999996
1698		88	11		0.923564
1699	88		11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain