SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10734

Length: 402 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene10734
AACGATATATCGATTTACAACTTCGTCCGTTGGGATTTCCATCTTGTCATCAGGTGTGTTGTGGGAAGAGGAAGAGACTTGTAACTCCAAACACCTCAAATACCCTCCATACCCTACCGAATTCTCTTGAAACTTGAAACGGTCTGCAGTTGCTAAATTTCCTTATTGTTTTGTTTCTTGGGTTCGTGTGCTTTCTGGGTTTGAAATCAAGGGCGGAGCTGGGCTGTTCAGGGCGCCATGGATAGGTACCAGAGGGTGGAGAGGCCGAAGGCTGAGACTGCAATTAATCAGAATGAAATCCGGGTGACAACTCAAGGGTTGATAAGGAATTATGTCAGTTATGCCTCGAGTCTCTTGCAGGACAAGGCAACTCCAGAAATTGTGTTGAAAGCAATGGGCCAA

Ace file of the UniGene sp_v1.1_unigene10734

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nucleic acid binding	-	-	1.0e-15	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	macronuclear development protein	-	-	1.55073e-22	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	1.55073e-22	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	DNA/RNA-binding protein Alba-like	IPR002775	-	1.55073e-22	89%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRK5

Fln msg: Distance to subject end: 185 aas, your sequence is shorter than subject: 55 - 240

Fln protein: MDRYQRVERPKAETAINQNEIRVTTQGLIRNYVSYASSLLQDKATPEIVLKAMGQ

Protein Length: 56

Fln nts: AACGATATATCGATTTACAACTTCGTCCGTTGGGATTTCCATCTTGTCATCAGGTGTGTTGTGGGAAGAGGAAGAGACTTGTAACTCCAAACACCTCAAATACCCTCCATACCCTACCGAATTCTCTTGAAACTTGAAACGGTCTGCAGTTGCTAAATTTCCTTATTGTTTTGTTTCTTGGGTTCGTGTGCTTTCTGGGTTTGAAATCAAGGGCGGAGCTGGGCTGTTCAGGGCGCC_-_ATGGATAGGTACCAGAGGGTGGAGAGGCCGAAGGCTGAGACTGCAATTAATCAGAATGAAATCCGGGTGACAACTCAAGGGTTGATAAGGAATTATGTCAGTTATGCCTCGAGTCTCTTGCAGGACAAGGCAACTCCAGAAATTGTGTTGAAAGCAATGGGCCAA

Fln Alignment:

sp_v1.1_unigene10734___MDRYQRVERPKAETAINQNEIRVTTQGLIRNYVSYASSLLQDKATPEIVLKAMGQ
B8LRK5_______________MDRYQRVERPKAETAINQNEIRVTTQGLIRNYVSYASSLLQDKATPEIVLKAMGQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain