SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10719

Length: 1368 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10719

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to RNA binding / translation initiation factor n=1 Tax=Vitis vinifera RepID=UPI000198501E	-	-	3.0e-34	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	rna binding protein	-	-	0.0	61%

Source	GOs	Term	Type	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	61%
Blast2go	RNA binding	GO:0003723	Molecular Function	61%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	61%

Source	InterPros	Term	Type	Identity
Blast2go	Translation initiation factor 1A (eIF-1A)	IPR001253	-	61%
Blast2go	RNA-binding domain, S1, IF1 type	IPR006196	-	61%
Blast2go	Nucleic acid-binding, OB-fold	IPR012340	-	61%
Blast2go	Nucleic acid-binding, OB-fold-like	IPR016027	-	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMM1

Fln msg:

Fln protein: MGRGRKNSKKEALEGCFEIPQGQTVMQVVSSRGSNLIELMDDTGFKTLALFPAKFHKSLWIKRGNYVLVEESDRERALEAGSKVTCVILQVLFEEQVRTLRKSSSWPQGFNVDKRSTVTATSGSDANVHKIDLHSEKEQYEEYSSDEGLPPLEANCNRRYPQELHVTSNEEETSDSDT*

Protein Length: 180

Fln nts: CGTCGTGACCTTGGCTGTCAGTGATATTTTACCTAGTTGTGCGTCAATCCACAACGCCAATTATGGTCCATCATAAGCTCGATAAGCTCGCTGGAAGCTACTAGGGCGGCGATTTCTCCTTCTACAGATTTCAAACCTGAAACCCTCGCCGGCACTTTCAACTGCAGAAGTGTCAACGGATTCATTCGGCTCGGTTATTGTTACAGTTGCTGTGCGAATTAACGGAGCTGCCGTGCAAATCATAGGGAGACACGGCGCTGCCGTGTTAGCATCGAGGAAGCCATCGATGGTCATGGAGGGAGCCATCGTCTAATTCAGAGTGAGCACTTGAGTTTACCAGTGATAAAGAAGGAGCTACCTGACCGCAGTCCGCCGCGGAACGTGCATGACAGG_-_ATGGGAAGAGGTCGGAAAAACTCGAAGAAAGAAGCTCTCGAAGGCTGCTTTGAAATACCACAAGGGCAAACTGTAATGCAAGTTGTCTCCAGTCGAGGGTCGAATCTCATAGAGCTGATGGACGATACGGGTTTCAAAACCTTGGCTCTCTTTCCAGCCAAATTTCACAAAAGTCTCTGGATAAAACGAGGTAATTATGTTTTGGTGGAGGAAAGTGACAGAGAAAGAGCTTTAGAAGCAGGCAGCAAAGTTACTTGTGTGATTTTACAAGTTCTTTTTGAAGAGCAAGTGCGCACCCTTCGAAAATCTTCTAGCTGGCCTCAAGGATTTAATGTTGATAAAAGGTCTACAGTGACTGCTACATCTGGGAGTGATGCAAATGTACACAAAATTGATTTACATTCTGAGAAAGAACAGTATGAAGAATACTCAAGTGATGAAGGGTTGCCACCTCTTGAAGCCAACTGCAACAGGCGTTATCCTCAAGAGTTGCATGTGACATCTAATGAAGAAGAGACATCAGATTCTGATACATAA___GTCATGCAATTTTGCTTTCTTTTGAAGCCCTGGCACACTAGATAACAATTCCTACTTTGAACGCATTGAGAGACATTTTCAAGTGATATATTTGCCCTTACATTATCATGTCAGGTAGCCTTCTTTTTGTCCTGTTTATTGTATTGAGATTCAGTGGTCTTTTAGAAAATGTTAACGCGGTCTCATATGATCTACATTGTGTGCAAATAATCAATTCTGCTCTCTCCAAAAGGAGAGGAGGACCAAAATTTTTGTTATTATTTGCCCAAATTCATTCATAGCTTTGATTTTTGGAATTCAAACATGACTTGAATTTTTGAAGACTGAACAGTGAAGAAGAAAGTCTGATTTTGCAAAGAACATTTAAATTTTAATTGAAGAAGAATATAGTGAAGCGTCTTTGTCATCTATAGTCAATATTATGTAGTTTTTGACTAT

Fln Alignment:

sp_v1.1_unigene10719___MGRGRKNSKKEALEGCFEIPQGQTVMQVVSSRGSNLIELMDDTGFKTLALFPAKFHKSLWIKRGNYVLVEESDRERALEAGSKVTCVILQVLFEEQVRTLRKSSSWPQGFNVDKRSTVTATSGSDANVHKIDLHSEKEQYEEYSSDEGLPPLEANCNRRYPQELHVTSNEEETSDSDT
A9NMM1_______________MGRGRKNSKKEALEACFEIPEGQTVMQVVSSRGSNLIEVMDDTGFKTLALFPAKFHKSLWIKRGNYVLVEESDRERALEAGNKVTCAIVQVLFEEQVRTLRKSSRWPQGFNVDKRSAVTATAGSDANVHKLDLHSEKEQYEEYSSDEGLPPLEANCNRHYPRELHLTSNEEETSDSDS

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
69		66	33		0.997452
70		66	33		0.997452
73		66	33		0.997452
77	66	33			0.997452
78		33	66		0.997452
79	33	66			0.997452
98			66	33	0.997452
112	33		66		0.997452
230			33	66	0.997452
234			66	33	0.997452
961		4		95	0.996252
1128		80		20	1.0
1211			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain