SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10704

Length: 1422 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10704

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	snRK1-interacting protein 1	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	1-interacting protein 1	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	78%
Blast2go	plastid	GO:0009536	Cellular Component	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC90

Fln msg:

Fln protein: MAWLTRALLRSSCSSQPCFESIRRVVATTPAWATMRLQHSDVPGEADSEASDIPSSTISRPLADILRELNRRVPDRLVKFRVEEGFTNKYVPWHIVNRIMNLHAPEWSGEVRSITYSNDGKSVSVVYRVTIYGVDAEIHREATGSASTGDTGFGDPVQKAEAMAFRRACARFGLGLHLYHEDIL*

Protein Length: 186

Fln nts: TGTATTTCAAAAGTACTTTCTATTCTTTGCAAACCTTCTTTAAACTTTAGGTACTAAGGCGCCATTTCTTGGCGGCTTAATAAAAGATCCGAACTCGATTTTCTGTTCAAAATGCTTTGGGTTTAAGTGGGAAAATGTAAATAGGTTTACTGTCCCATAAATACCAGCGAGGCATTAAGCAAATGTTAGCCCTCTGAGACTTTCGGACAAGCATTAGACCTGTGAGATTTTCGGACAAGCAGACAAAAAAACG_-_ATGGCCTGGTTGACGCGAGCTCTCCTCCGAAGCTCTTGCTCTTCCCAGCCGTGTTTTGAGTCAATTCGCAGAGTTGTTGCTACTACCCCTGCATGGGCCACAATGCGCCTGCAGCATAGCGACGTCCCAGGGGAAGCTGATTCCGAAGCGTCCGATATTCCTTCTTCGACCATAAGCAGACCGCTGGCAGATATTCTACGCGAATTAAACCGCAGAGTTCCTGATAGATTGGTCAAATTCAGAGTCGAGGAGGGATTCACCAACAAATATGTGCCATGGCACATTGTAAATAGGATTATGAATTTGCATGCTCCAGAATGGTCTGGAGAGGTTCGCAGCATCACCTACTCGAATGATGGCAAGTCTGTATCAGTTGTCTATCGTGTAACCATCTATGGTGTCGATGCTGAGATTCATCGTGAAGCAACTGGGTCCGCTTCCACAGGTGACACAGGTTTTGGAGACCCTGTTCAAAAAGCAGAAGCAATGGCATTTCGCCGTGCATGTGCTCGTTTTGGCCTTGGGCTCCATCTTTATCATGAAGATATACTATAA___GGAGCAGTTGTTTGGCAAATTTTGTGTATTTCCACACAAATTAGAATGAAAGAAAGAGGGTTTAAAGGAGATCAAATTACAAACGGCCTATATATGGGGCATATGATTGGAGTTCGCTTTTTCATGCCAGAACAACTGAAGTGTGGCCTTTTTCATATTTAATCTTTTGTCAACGTTAAGTAGTTGCTGTTTCTGACACCAACTGTTATCACTGGACTGCTCCTGTGTCCTTTTTCTCTACAGATTATGCTTCAAACTGTTGGAGTTTGGCATTAGTTTTTGGTTCCTCCATGCTTGAGGAGAAGATGCTTCCTATGACATTTAGCATTATTTTTTTCTTCCCCCAAGGCTGAGCTAGGTGACCAGTCTATGTTTTTGCAGTGAAATTGGAACTCATATTTGGCAGTAGATTGGACTCGAGTTGATTGATGAATTTCAAGTTCAAATGATGGTTACAGCCAGAACCAGGTTGGCAGGCTATGTTGGAGATAATTTGCTTGACCATGCATTTGTTGAAATATTGCCTCATTGCCTTGATGTTTGATGCCAGTATTTTCAAACTATTTGTCTACTATAAACTTTGTTTGAGCATGCCAAGTCCAGCTTGAAAGTGC

Fln Alignment:

sp_v1.1_unigene10704___MAWLTRALLRSSCSSQPCFESIRRVVATTPAWATMRLQHSDVPGEADSEASDIPSSTISRPLADILRELNRRVPDRLVKFRVEEGFTNKYVPWHIVNRIMNLHAPEWSGEVRSITYSNDGKSVSVVYRVTIYGVDAEIHREATGSASTGDTGFGDPVQKAEAMAFRRACARFGLGLHLYHEDIL
D5AC90_______________MALLMRALLRSSCASQPSFESIHRVVATTPAWATRRLQHSGAPGETDSEIPEIPSSTISRPLADILRELNRRVPDRLVKIRVEEGFTTKYVPWHIVNRIMNLHAQEWSGEVRSITYSNDGNSVSVVYRVTIYGVDAEIHRESTGSASTGDTNFGDPVQKAEAMAFRRACARFGLGLHLYHEDIL

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
103	33	66			0.997452
106			33	66	0.997452
107			33	66	0.997452
108		66	33		0.997452
141	66	33			0.997452
175		33		66	0.997452
185	16		33		1.0
187			33	66	1.0
188			33	66	1.0
313		10		90	0.90298
315	90	10			0.90298
318		90	10		0.90298
320	90	10			0.90298
323		90	10		0.90298
326	90			10	0.90298
329		10	90		0.90298
331		10		90	0.90298
332	10		90		0.90298
337		10		90	0.90298
650		12		87	0.992554
651	87		12		0.992554
653		12	87		0.992554
657	14			85	0.993533
659		14	85		0.993533
660	85			14	0.993533
666	85			14	0.993533
667		14	85		0.993533
669		14		85	0.993533
771		20		80	0.995493
772			20	80	0.995493
775	20		80		0.995493
785		80		20	0.995493
791		20		80	0.995493
792	20			80	0.995493
954		12	87		1.0
961		86	13		1.0
963		13		86	1.0
964	13			86	1.0
965		13		86	1.0
1032			71	28	1.0
1037		28		64	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain