SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10698

Length: 1375 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10698

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transporter, putative	-	-	61%
FL-Next	tr=Os02g0321500 protein; Oryza sativa subsp. japonica (Rice).	-	-	63%
Blast2go	sec14 cytosolic factor-like	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	75%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	CRAL-TRIO domain	IPR001251	-	0.0	75%
Blast2go	CRAL/TRIO, N-terminal domain	IPR011074	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: Q6ER71

Fln msg:

Fln protein: MLHALSLGSLTPMPQLLPRPQPLHILPQVGFGIHGISLRAKHCRCNAGSQKYTSSAVDEYHKSILEVKERLEREHGNLPIGKSGRDDEEMILWFLKDRKFNVDHTACKLANAIAWRKEFGVDNLTEESIRNMASTGKAYLHEFPDVKGRPVVVVVAAKHLPSKHNLLESEKLCVYLLEKALSQLPPGEEKILGIFDLRGFTLQNGDLMFIKFLIDVFYNYYPKRLGQVLFVDAPLIFQPGWNIVKPWLKSYANLVRFCSADVVREEYFTAKTVPLDFRA*

Protein Length: 281

Fln nts: CGTCGTGACCTTGGTTGTCATTGGGGAAACAAAACAAGGGACGCGAGATGAGCTTCCGTAGCCCAGCCCAAGGAGATTGCATCGATATTATGCGAAATTTGAAAGGATTGGGTTTTGGATAAAGTGGCATAGGAGCGCACAGTCACATTTGAGCATGGAACATGATAGTGCAGATGATAACACTCA_-_ATGTTGCACGCGTTATCTCTCGGTTCTCTTACACCAATGCCACAGCTCTTACCCCGTCCTCAACCTCTGCACATTCTTCCACAAGTTGGCTTTGGGATACACGGAATATCTCTCAGAGCCAAACATTGCCGATGCAATGCCGGAAGCCAGAAGTATACTTCATCCGCAGTTGACGAATATCATAAATCAATTTTAGAAGTCAAAGAACGGCTAGAAAGAGAGCATGGGAACCTACCCATAGGAAAAAGTGGAAGGGATGACGAGGAAATGATCCTCTGGTTTTTGAAGGACCGCAAATTTAACGTGGACCACACTGCCTGCAAGTTGGCTAATGCCATTGCTTGGCGCAAAGAATTTGGTGTTGATAATCTCACAGAGGAATCAATTCGAAACATGGCATCCACAGGAAAGGCTTATCTTCATGAATTCCCTGATGTGAAGGGCCGGCCTGTAGTGGTGGTTGTTGCAGCCAAACATCTTCCATCTAAACATAACCTGCTGGAGAGTGAGAAGCTGTGTGTTTATTTGCTTGAGAAAGCCCTTAGTCAGCTTCCTCCTGGAGAAGAGAAGATACTAGGTATATTTGATCTTCGAGGGTTCACTCTCCAAAATGGAGATCTGATGTTCATAAAGTTTCTGATAGATGTGTTCTATAATTACTATCCAAAGAGACTTGGACAAGTGCTTTTTGTAGATGCTCCATTAATATTTCAGCCTGGTTGGAATATTGTCAAACCCTGGTTGAAGTCATATGCCAATCTGGTCAGATTTTGTAGTGCAGATGTTGTTCGAGAGGAATATTTTACAGCAAAGACCGTGCCTCTTGATTTCAGAGCTTGA___ATTTTGTTACTAAGAAGAGTTTAAATCAAAATTTCCCTTAAAGCAGGGTGATATTAGAATAAATTGGTGGATGATTTTAACATATGTATGATTTCAGAGCTTGAATTTGGTTACTAAGAAGAGTTTAATTCAAAATTTCCTTAAAGCAGGGTGATATTAGAATAAGTTAGTGGATGATTTTAACATATGTTTAATAAATGCATCATATGGTGTGATTCAGATCACTGGAAACATGTCGATAGGTATTGTATTTTAGCCTCTATGCATTCAGTAGGAACATCTTTCCTATCATCGTGAGTGCTATACTGCAAGGAATAATGAATCATGGTCTTTTATTAATACTACAAAA

Fln Alignment:

sp_v1.1_unigene10698___HCRCNAGSQKYTSSAVDEYHKSILEVKERLEREHGNLPIGKSGRDDEEMILWFLKDRKFNVDHTACKLANAIAWRKEFGVDNLTEESIRNMASTGKAYLHEFPDVKGRPXXXXXXXKHLPSKHNLLESEKLCVYLLEKALSQLPPGEEKILGIFDLRGFTLQNGDLMFIKFLIDVFYNYYPKRLGQVLFVDAPLIFQPGWNIVKPWLKSYANLVRFCSADVVREEYFTAKTVPLDF
Q6ER71_______________HCCSTAPPSGGTSTSSS---KLVLEVKERLEREHPGLPTGRNGRDDEEMILWFLKDRKLSVDETVSKLTKAIKWRQDFQVSELSEESVKGLYQTGKAYVHDSFDIYGRPVLVVVASKHFPSKQDPVENEKLCAFLVEKALSRLPLGTENILGIFDLRGFQVENGDLQFLKFLIDVFYYYYPKRLGQVLFVDAPFVFQPMWQLVKPLLKQYASLVRFCDVETVRKEYFTKETVPPDF

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
166			84	15	0.999986
201			7	46	1.0
261	60	10		30	1.0
296	88			11	0.923564
297		11		88	0.923564
337	87		12		0.992554
344		25		75	1.0
356	85		14		0.993533
377	50		50		1.0
890	85		14		0.999981
912	85		14		0.999981
999	80		20		0.999996
1004	20	80			0.999996
1049			22	77	0.999999
1074			77	22	0.999999
1081	77		22		0.999999
1094	20		80		0.999996
1112	80	20			0.999996
1128		75		25	1.0
1131		50	50		1.0
1238	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain