SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10646

Length: 1234 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10646

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Galactose-1-phosphate uridylyltransferase n=1 Tax=Populus trichocarpa RepID=B9IPP8_POPTR	-	-	53%
FL-Next	sp=Probable galactose-1-phosphate uridyl transferase; Arabidopsis thaliana (Mouse-ear cress).	-	-	50%
Blast2go	galactose-1-phosphate uridylyltransferase	-	-	62%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.7.7.1-	-	0.0	62%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	62%
Blast2go	positive regulation of cellular response to phosphate starvation	GO:0080040	Biological Process	62%
Blast2go	UTP:galactose-1-phosphate uridylyltransferase activity	GO:0017103	Molecular Function	62%

Source	InterPros	Term	Type	Identity
Blast2go	Galactose-1-phosphate uridyl transferase, class I	IPR001937	-	62%
Blast2go	Galactose-1-phosphate uridyl transferase, N-terminal	IPR005849	-	62%
Blast2go	Histidine triad-like motif	IPR011146	-	62%
Blast2go	Histidine triad motif	IPR011151	-	62%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q9FK51

Fln msg: Distance to subject end: 113 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 229 - 351

Fln protein: MEGGLATATGCSEMRHDPILDKWVIISPARGKRPTDFKSNTDPSNSQSQGPCAFCLNHEHECAPEIFRIPEGTSAWMVRVIKNLYPALSMDHESTQFSHRSPNQLHTTLTGFGSHDVVIETPEHSMTLANMPESSILRVLIAYKVRVQQLASNEIIKYIQVFKNHGVTAGASMRHSHSQIIGLPIVPSNVECRLNNAREYFTRTGKCNLCECLSREIQSFAVSDRPLRL

Protein Length: 230

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTAATAGATTCGTTGTCTAAATTCCTTCTGTGAAAGGAAATATGTTTAGCTTAATAGATTGGTTGTCTGTACCATCACAATACGTGTACAGTCTGAAGTCTAAGCAAATTTTAAGATATTTATCATTTACTTTGTGTTGGGGGTAGCCTCTGACATACCAAACGCTATTTATCGTCGTGACCTTGGCTGTCACTCAATTGTTCTGCGTCCATTTGGCAGCTAAACTTCACAATCCTTGGATAATCCTGGTTCCTAAGTATCATTTTGTGTTCATCGTAAATTTTAATGGACACATTGCAAAGCCCAAAAGATTAGAAGGAATGAATTCTCGTATTTCAGTGAGTTGACATTTGTGACTCCGGTGAGAAAGAATGAATTTCCGTCTTGACATTTGTGACTCGATGTGTTTGTTATGAGATTCGCCCAATTATCAATGGTGAAAGAACCCAATCCTCTACTTGTTTCTGTGTTTGTTTTCATGGGCTAATTCTGAGCAAGCATCTCAGCTAATCTCCAAACA_-_ATGGAAGGAGGGTTAGCAACAGCAACTGGATGTTCAGAGATGAGACATGACCCAATTCTAGACAAATGGGTAATCATATCTCCTGCTAGAGGCAAACGCCCCACGGACTTCAAATCCAATACAGACCCAAGTAATTCTCAATCTCAAGGGCCCTGTGCATTCTGTCTCAACCATGAGCATGAATGTGCCCCTGAAATCTTTAGAATCCCCGAGGGCACTTCAGCTTGGATGGTTAGAGTCATAAAAAACCTGTACCCGGCTCTCTCAATGGATCATGAATCCACCCAATTCTCTCATCGTTCTCCCAACCAACTTCATACTACCCTTACAGGATTCGGCTCTCATGATGTAGTTATCGAGACTCCTGAACATTCTATGACTTTGGCAAACATGCCTGAATCAAGTATACTTCGTGTTTTAATTGCATATAAAGTAAGAGTTCAACAGCTTGCAAGCAACGAGATTATTAAATACATCCAGGTTTTCAAAAATCACGGAGTCACAGCAGGAGCATCAATGAGGCATTCTCACAGTCAGATCATTGGCCTTCCCATTGTCCCTAGTAATGTGGAATGCAGGCTTAATAATGCAAGGGAGTACTTTACCAGGACAGGAAAATGCAACCTCTGCGAGTGTTTGAGCAGGGAGATACAGTCCTTCGCAGTGAGTGACAGGCCACTGAGACTGC

Fln Alignment:

sp_v1.1_unigene10646___EMRHDPILDKWVIISPARGKRPTDFKSNTDPSNSQSQGPCAFCLNHEHECAPEIFRIPEGTSAWMVRVIKNLYPALSMDHESTQFSHRSPNQLHTTLTGFGSHDVVIETPEHSMTLANMPESSILRVLIAYKVRVQQLASNEIIKYIQVFKNHGVTAGASMRHSHSQIIGLPIVPSNVECRLNNAREYFTRTGKCNLCECLSR
Q9FK51_______________ELRKDPVTNRWVIFSPARAKRPTDFKSKSPQNPNPKPSSCPFCIGREQECAPELFRVPDHDPNWKLRVIENLYPALSRNLETQ--STQPETGTSRTIVGFGFHDVVIESPVHSIQLSDIDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMALPVVPPTVSSRLDGTKDYFEETGKCCLCEAKSK

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
222		66	33		1.0
223			11	88	0.923564
224		88	11		0.923564
225	66		11		0.999999
251	90	10			0.90298
252	90		10		0.90298
253	90			10	0.90298
255			10	90	0.90298
257		90	10		0.90298
260	90	10			0.90298
261	90			10	0.90298
263		90	10		0.90298
267		10	90		0.90298
268	10		90		0.90298
269	90	10			0.90298
271	90	10			0.90298
274	20	80			0.999996
343	88	11			0.999937
345	88			11	0.999937
346	88	11			0.999937
350	88			11	0.999937
353	88		11		0.999937
354	88	11			0.999937
358	11			88	0.999937
360		11	88		0.999952
361	11			88	0.999952
648		50		50	1.0
661	75		25		0.996473
662	75	25			0.996473
664			25	75	0.996473
665		75		25	0.996473
666		75	25		0.996473
668	75		25		0.996473
674	75		25		0.996473
768		50		50	1.0
799		66		33	0.997452
814	33			66	1.0
816	66	33			1.0
817	66			33	1.0
819			83	16	0.994512
823	66		33		1.0
829		33	66		1.0
833		66		33	1.0
849		14		85	0.993533
872		87		12	0.992554
967	12		87		0.992554
1149	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain