SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10624

Length: 2620 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene10624
CGTCGTGACCTTGGCTGTCACTCAACATTGGAAACCCTGATTTTCATCCGAGGAGTTGCACTCTGCAGAGATTATTGCTACTGTTATTTGCGTTCAGCTATGCGGTCCTCTGCTGTTCAGATGAGATTGCTCCGATCCATCGGCCGAGGCGAAAAGAACAGAGTTTGCCGATCTCGAACACAGCAGATAGCAGGCATTTGTTATATTGATTGATCTGTTATGCTCGGCAAGGAGCCATTTCTAATATCTCAAACATTAAGGAGGATTTGGTACAAGAGAATTCTCTAGGAATGTTTAATAAAATTATTGGCAAGCGGTCCAGTCGCAAGAATTCGAAGTCTGAAAGTAATGAAAGCTCGGGCTCGACGACGAATCCCGCGAATGCATCCGGGGGCAGAGCGGGTGCATCGGGAGGTAATTCCACAAATTCTCGGAATTCTGGGTCGGGAGCAGGACATTCAGGATCTAAAATCGCCATAAACCATGTTCCTAGGAACAGTCTTTCCTTGGCGGCACCGCATCATCAGGCTGCAGCTCGAATGCTGCCTGGGAAGGAAAAGTCTCCAGGAAGCACAGCTATTACCACCGCTAATGGAGGTTTTTCTGCTATGGAAAATCTGCCAGCGTTCAGAGATGTTGCTGCCTCTGAAAGACTGAACCTCTTTTCGAAGAAGTTGAGTCTTTGTTGTCACGTGTTTGATTTCTTGGATCCTGCAAAGAATGTAAGAGAGAAAGAAATCAAACGGCAGACCCTTCTGGAACTCGTCGATTTTATTCAAGCCGGTTCGAACAAGCTTAATGAATCTCTACAGGAAGAGCTTGCAAAGATGTTCTCGGAAAACCTTTTCCGCTGCTTGCCTCCTTCTGCTCATGAAAATACAGGATCTGAGGTCTTTGACCCAGAAGAAGAGGAACCGTGTATGGAACCCGCCTGGCCACATTTGCAAATAGTGTATGAACTTCTGCTGCGATACATAGTATCTACAGAAACAGATCCCAAAATTGCGAAGAGATATATTGATCACTCCTTTGTCTTGAGATTGCTTGAATTGTTCGATTCTGAGGATCATCGGGAGAGAGAGTATTTGAAAACTATATTGCACCGCATTTATGGGAAGTTCATGGTGCACCGTCCCTATATACGGAAAGCAATCAACAATATATTCTATCGTTTTGTTATGGAGACAGAAAGGCATAGTGGCATTGGTGAGCTGTTAGAAATTTTAGGGAGCATAATTAATGGTTTTGCACTTCCCATGAAAGAGGAGCATAAATTGTTTCTAGTAAGAGCTCTTATTCCTCTACACAAACCTAAGTGTGTTGCTCTTTATCATCAGCAACTCTCCTATTGCATCACACAGTTTGTTGAAAAAGACTACAAATTGGCAGATACTGTTATTAGGGGTTTATTGAAGTACTGGCCTGTTACAAACTGTCAAAAGGAGGTATTGTTTCTGGGGGAGCTAGAGGAGGTCTTAGAATCTACACAAGCTGCAGAATTTCAGCGCTGTATGGTCCCTCTATTTCGGCAGATTGGTCGGTGCCTCAATAGCTCACATTTCCAGGTTGCTGAACGAGCTCTCTTCTTGTGGAACAATGACCATATAGTCAGTTTGATAGCTCAAAACCGCAGTGTTCTTCTTCCACTCATTTATGAAGCTTTGGAGAAGAATACTCAGAGCCATTGGAACCAGACAGTTCATGGTTTGACATTGAATGTGAGAAAGATGTTCATGGAAATGGATAGTGACCTTTTTCATGAATGTCGGCGCATATTTCAAGAGAAGCAAGCAAAAGCGAAAGAAAATGAAGAAAAACGTGAACTGATCTGGAAACGTTTAGAAGAAGTTGCGGAGTCCAAAAGTGGAAGCAAAGAATCCTTGCCAGCCATTCAGGCATTAAAGATTTGAGGGTCAGATTGAACCAGCTTTAAATGAGCAAATTGATAGTTAACCTGATAAAGGGAACCCATTAAAGTTGGTGAGATTTTTATAGGGACTTTGTTGTAAACCTTAATATGTTCAATATCTATGGAAGTCCAGAGAAAGCAGACCTGGAGGAATGTGCTCTTCTTAAGATTGTCTTGTGAAAGAAAAGTGGATGGGCTGTTCTAATTTGAAGGAGTGAAAGGTTATGATCAGCTTGGCTTGTTGTCCAAGTGAAGGAGAATGTAATGTATCAATCTTGTCGTGTTCAGGTATGAATGAATTTCCATCACTGATTTTAGAGTATTGGTTGCAGTGTTCAAATTTGCTATTTTGGAATTTCTGTGCTATTATGATTATTATGGATGTTGCGAAGCAGATCATCGATTCTCTTTTTGCCATGCCCACTGCATGGAGCTAGGAATAAATCCATGACCCTAATTGCTTGTAGCTTCTATAGGTATATTGTTATAATGTCTAATTCTGAAGCTTTTTTCATATCTCTGTTGGACATTTGTCCAATAATGAATGCTTCCAGTTTTTTCTATTGACAATTATTGGGTCTTATATAATGATAATTTAAAATATTTCTTGACTATTGGAAATATAGATGCAAGTGGTCATGTGTTTAACATTTAGGGTACATTTTGCTAGCTCTTAAGAGTAATTTATATTGATAATGTAGCTATTGTGGT

Ace file of the UniGene sp_v1.1_unigene10624

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	serine/threonine protein phosphatase 2A; K11584 protein phosphatase 2 (formerly 2A), regulatory subunit B'	-	-	67%
FL-Next	sp=Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform; Arabidopsis thaliana (Mouse-ear cress).	-	-	71%
Blast2go	protein	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	84%
Blast2go	signal transduction	GO:0007165	Biological Process	84%
Blast2go	protein phosphatase type 2A regulator activity	GO:0008601	Molecular Function	84%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	84%
Blast2go	ATP binding	GO:0005524	Molecular Function	84%
Blast2go	protein phosphatase type 2A complex	GO:0000159	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein phosphatase 2A, regulatory B subunit, B56	IPR002554	-	0.0	84%
Blast2go	Armadillo-type fold	IPR016024	-	0.0	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O04376

Fln msg: your sequence is longer than subject: 540 - 499

Fln protein: MFNKIIGKRSSRKNSKSESNESSGSTTNPANASGGRAGASGGNSTNSRNSGSGAGHSGSKIAINHVPRNSLSLAAPHHQAAARMLPGKEKSPGSTAITTANGGFSAMENLPAFRDVAASERLNLFSKKLSLCCHVFDFLDPAKNVREKEIKRQTLLELVDFIQAGSNKLNESLQEELAKMFSENLFRCLPPSAHENTGSEVFDPEEEEPCMEPAWPHLQIVYELLLRYIVSTETDPKIAKRYIDHSFVLRLLELFDSEDHREREYLKTILHRIYGKFMVHRPYIRKAINNIFYRFVMETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALIPLHKPKCVALYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPVTNCQKEVLFLGELEEVLESTQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIVSLIAQNRSVLLPLIYEALEKNTQSHWNQTVHGLTLNVRKMFMEMDSDLFHECRRIFQEKQAKAKENEEKRELIWKRLEEVAESKSGSKESLPAIQALKI*

Protein Length: 541

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACATTGGAAACCCTGATTTTCATCCGAGGAGTTGCACTCTGCAGAGATTATTGCTACTGTTATTTGCGTTCAGCTATGCGGTCCTCTGCTGTTCAGATGAGATTGCTCCGATCCATCGGCCGAGGCGAAAAGAACAGAGTTTGCCGATCTCGAACACAGCAGATAGCAGGCATTTGTTATATTGATTGATCTGTTATGCTCGGCAAGGAGCCATTTCTAATATCTCAAACATTAAGGAGGATTTGGTACAAGAGAATTCTCTAGGA_-_ATGTTTAATAAAATTATTGGCAAGCGGTCCAGTCGCAAGAATTCGAAGTCTGAAAGTAATGAAAGCTCGGGCTCGACGACGAATCCCGCGAATGCATCCGGGGGCAGAGCGGGTGCATCGGGAGGTAATTCCACAAATTCTCGGAATTCTGGGTCGGGAGCAGGACATTCAGGATCTAAAATCGCCATAAACCATGTTCCTAGGAACAGTCTTTCCTTGGCGGCACCGCATCATCAGGCTGCAGCTCGAATGCTGCCTGGGAAGGAAAAGTCTCCAGGAAGCACAGCTATTACCACCGCTAATGGAGGTTTTTCTGCTATGGAAAATCTGCCAGCGTTCAGAGATGTTGCTGCCTCTGAAAGACTGAACCTCTTTTCGAAGAAGTTGAGTCTTTGTTGTCACGTGTTTGATTTCTTGGATCCTGCAAAGAATGTAAGAGAGAAAGAAATCAAACGGCAGACCCTTCTGGAACTCGTCGATTTTATTCAAGCCGGTTCGAACAAGCTTAATGAATCTCTACAGGAAGAGCTTGCAAAGATGTTCTCGGAAAACCTTTTCCGCTGCTTGCCTCCTTCTGCTCATGAAAATACAGGATCTGAGGTCTTTGACCCAGAAGAAGAGGAACCGTGTATGGAACCCGCCTGGCCACATTTGCAAATAGTGTATGAACTTCTGCTGCGATACATAGTATCTACAGAAACAGATCCCAAAATTGCGAAGAGATATATTGATCACTCCTTTGTCTTGAGATTGCTTGAATTGTTCGATTCTGAGGATCATCGGGAGAGAGAGTATTTGAAAACTATATTGCACCGCATTTATGGGAAGTTCATGGTGCACCGTCCCTATATACGGAAAGCAATCAACAATATATTCTATCGTTTTGTTATGGAGACAGAAAGGCATAGTGGCATTGGTGAGCTGTTAGAAATTTTAGGGAGCATAATTAATGGTTTTGCACTTCCCATGAAAGAGGAGCATAAATTGTTTCTAGTAAGAGCTCTTATTCCTCTACACAAACCTAAGTGTGTTGCTCTTTATCATCAGCAACTCTCCTATTGCATCACACAGTTTGTTGAAAAAGACTACAAATTGGCAGATACTGTTATTAGGGGTTTATTGAAGTACTGGCCTGTTACAAACTGTCAAAAGGAGGTATTGTTTCTGGGGGAGCTAGAGGAGGTCTTAGAATCTACACAAGCTGCAGAATTTCAGCGCTGTATGGTCCCTCTATTTCGGCAGATTGGTCGGTGCCTCAATAGCTCACATTTCCAGGTTGCTGAACGAGCTCTCTTCTTGTGGAACAATGACCATATAGTCAGTTTGATAGCTCAAAACCGCAGTGTTCTTCTTCCACTCATTTATGAAGCTTTGGAGAAGAATACTCAGAGCCATTGGAACCAGACAGTTCATGGTTTGACATTGAATGTGAGAAAGATGTTCATGGAAATGGATAGTGACCTTTTTCATGAATGTCGGCGCATATTTCAAGAGAAGCAAGCAAAAGCGAAAGAAAATGAAGAAAAACGTGAACTGATCTGGAAACGTTTAGAAGAAGTTGCGGAGTCCAAAAGTGGAAGCAAAGAATCCTTGCCAGCCATTCAGGCATTAAAGATTTGA___GGGTCAGATTGAACCAGCTTTAAATGAGCAAATTGATAGTTAACCTGATAAAGGGAACCCATTAAAGTTGGTGAGATTTTTATAGGGACTTTGTTGTAAACCTTAATATGTTCAATATCTATGGAAGTCCAGAGAAAGCAGACCTGGAGGAATGTGCTCTTCTTAAGATTGTCTTGTGAAAGAAAAGTGGATGGGCTGTTCTAATTTGAAGGAGTGAAAGGTTATGATCAGCTTGGCTTGTTGTCCAAGTGAAGGAGAATGTAATGTATCAATCTTGTCGTGTTCAGGTATGAATGAATTTCCATCACTGATTTTAGAGTATTGGTTGCAGTGTTCAAATTTGCTATTTTGGAATTTCTGTGCTATTATGATTATTATGGATGTTGCGAAGCAGATCATCGATTCTCTTTTTGCCATGCCCACTGCATGGAGCTAGGAATAAATCCATGACCCTAATTGCTTGTAGCTTCTATAGGTATATTGTTATAATGTCTAATTCTGAAGCTTTTTTCATATCTCTGTTGGACATTTGTCCAATAATGAATGCTTCCAGTTTTTTCTATTGACAATTATTGGGTCTTATATAATGATAATTTAAAATATTTCTTGACTATTGGAAATATAGATGCAAGTGGTCATGTGTTTAACATTTAGGGTACATTTTGCTAGCTCTTAAGAGTAATTTATATTGATAATGTAGCTATTGTGGT

Fln Alignment:

sp_v1.1_unigene10624___GSKIAINHVPRNSLSLAAPHHQAAARMLPGKEKSPGSTAITTANGGFSAMENLPAFRDVAASERLNLFSKKLSLCCHVFDFLDPAKNVREKEIKRQTLLELVDFIQAGSNKLNESLQEELAKMFSENLFRCLPPSAHENTGSEVFDPEEEEPCMEPAWPHLQIVYELLLRYIVSTETDPKIAKRYIDHSFVLRLLELFDSEDHREREYLKTILHRIYGKFMVHRPYIRKAINNIFYRFVMETERHXXXXXXXXXXXXXXNGFALPMKEEHKLFLVRALIPLHKPKCVALYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPVTNCQKXXXXXXXXXXXXXSTQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIVSLIAQNRSVLLPLIYEALEKNTQSHWNQTVHGLTLNVRKMFMEMDSDLFHECRRIFXXXXXXXXXXXXXRELIWKRLEEVAESKSG
O04376_______________GSNVVVSHASRGALV----------------NSSPSPVTATPPPPPLGSVEPLPLFRDVPVSERQTLFLRKLQNCCFLFDFTDTIKNARDKEIKRQTLLELVDFIQSGSSKISESCQEEMIKMISVNIFRSLPPASHENTGQEPADPEEEEPYLEPSWPHLQLVYELLLRYVVSTDTDTKVAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLIRVLIPLHKPKPIVVYHQQLSYCIVQFVEKDYKLADTVIRGLLKYWPVTNCSKENLFLGELEEVLEATQPVEFQRCMVPLFQQIGRCLTSSHFQVAERALFLWNNEHIVGLIAQNRSVILPIIYPTLEKNIQSHWNQAVHGLTTNIKKMFMEMDPELFEECQRQYEEKQAKSKEVEEQRQYTWKRLAEAAAERDG

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
422		80	20		0.995493
423	80			20	0.995493
425	80		20		0.995493
426	80			20	0.995493
427	80		20		0.995493
428	20			80	0.995493
429		20		80	0.995493
432		80		20	0.995493
435	75	25			0.996473
436	75			25	0.996473
437			25	75	0.996473
440	25			75	0.996473
441		25	75		0.996473
442			75	25	0.996473
443		25	75		0.996473
1331	18			81	0.999994
1333	90		10		0.90298
1334			10	90	0.90298
1338		90		10	0.90298
1478		44		55	1.0
1511	11	88			0.923564
1514			11	88	0.923564
1710		11		88	0.923564
1844	50		50		1.0
1907			80	20	0.995493
2000		16	83		0.994512
2050	70	10		20	0.999998
2053	70		10	20	0.999998
2055	80			20	0.999996
2059		20	80		0.999996
2061	90	10			0.90298
2062			90	10	0.90298
2064	90			10	0.90298
2067		10	90		0.90298
2085		10		90	0.90298
2113		23		76	1.0
2114		76	23		1.0
2116	76		23		1.0
2118		23		76	1.0
2122	76		23		1.0
2123	76	23			1.0
2124			76	23	1.0
2126	76			23	1.0
2127		23	76		1.0
2128	23			76	1.0
2129		23	76		1.0
2130	76			23	1.0
2131	76	23			1.0
2496		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain