SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10616

Length: 2640 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene10616
CGTCGTGACCTTGGCTGTCACTCAGTTTGGTATCTCATATGTCTGCAAGCATATGTGTCTCTGTCTTTGATTGAAATGTTGATTGTTTTAATCAAGATACACAGTTGGTCGTTTCCATCAAGATATACAATTTGATCCCTTTAGTCAAGATAGTTTCTCCTCGTGACCTTGGCAGATCAAAATTATATAAATACAAGAGGTATATGTAGAAAGGGGATGAAGAAGAGTGGTAGTTCAAACATGAACTGGAGTGGATAGATTAACTCAGTTACAGACAAAGATCTCAGCCTATCCTTAGGCCAGGTTAATCAGGTCTAAATAGCTATTTATTGCTGTTAGTGTAGAGAATTAGAGTGGCAATGGACACATCATTGGAATTGAGTAAAGAGGAAGAGGAGGAGAATTCACCGGTGGAGCAGGTGGCATTGACAGTGAGTACAGAAGACGATCCAACTATTCCTGTATGGACATTTCGAATGTGGTTTCTGGGGCTGCTTTCATGCGTGCTGCTCTCCTTTTTGAACCAGTTCTTCAGTTACAGGAAGGAACCACTTATCATCACACAGATTTCAGTGCAGGTGGCAGCCCTTCCCCTTGGGCGTTTCATGGCCTCGGCTCTGCCAAAGCGGAAATTCAGAGTGCCTGTGTTGGGGAAGGAGGTGTCTCTGAATCCAGGGCCCTTCAATATGAAAGAGCACGTCCTCATCACAATCTTTGCCAGTGCAGGCTATGCCTTCGGCAATGGATCTGCCTATGCTGTGGGTATTGTGAACATCATTAAGGCCTTCTACAGGAGGAATATCTCCTTTTTAGCAGCTTGGCTCATCATAATAACAACTCAGGTGTTAGGATATGGATGGGCTGGACTGCTTCGTAAGTATGTTGTAGAACCTGCACACATGTGGTGGCCAAGCACACTGGTCCAGGTGACCCTGTTCCGGGTACTGCATGAGAAAGACCATGGAAAGGGGATGTCTCGTAATACCTTCTTCTTCATTGCCATGACCTGCAGCTTTTGCTACTATGTATTCCCTGGTTATCTATTCTCAACCCTGACCAGTGTATCGTGGGTGTGCTGGATTTGGCCTCACTCTGTCACAGCACAGCAGATTGGCTCCGGCATGAATGGCCTTGGACTAGGTGCCTTTGGTTTCGATTGGAGCACCATCGCAGCCTTCTTGTTCAGTCCTCTTATTTCTCCATTCTTTGCCATTATGAATGTCATGGTTGGTTATGTCTTCGTAGTATACTTTGCAGTCCCTCTTGCTTACTGGGGCACTAACATGTACAATGCAAAGGCTTTTCCTATTTTCAGCTCGGATTTGTTCACAGCCCAAGGTCAAAACTATAATATTTCACAGATTGTGAACAATAAATTTGAGCTGGATCTTGCTGCTTACAATCAGAATGGTCAAATACATATGAGCTTGTTTTTTGCTCTGACTTATGGGTTTGGATTTGCAACCATTGCTTCTACAATTACCCATGTCGCTCTATTCTATGGGAAGGAAATATGGCAGCGTGCTGTAGCAGCATCCAAAAACAATCGGCCTGATATCCATACTAAATTGATGCGCAAATACCCTGACATCCCACAATGGTGGTTCTACACTCTCTTGTTGGGGACTCTTGCTGTTGCCTTTGCACTCTGCGAGGTTTACAAGAAAGAGGTACAATTACCATGGTGGGGGTTACTTTTTGCCTGTGCTCTCGCTTCATTTTTCACTCTTCCCATAAGTATCATCACCGCTACTACTAATCAGACACCAGGCCTGAACATTATCACCGAATACCTAATGGGATATATCCTTCCTGGGAAGCCTATAGCCAATGTTTGCTTCAAGGTCTATGGTTATATGAGCATGAGCCAAGCAGTTTCTTTCTTGTCAGACTTCAAGCTCGGCCATTACATGAAAATCCCACCACGCTCTATGTTCCTTGTACAGTTTATTGGCACAGTAGTGGCTGGAACAGTCAACCTGGGAGTTGCATGGTGGATGTTGGGATCGGTGAAAAATATATGCCAAACGGATCTTTTGTCTGCAAGTAGCCCATGGACATGTCCCAATGATCATGTGTTCTTCGATGCATCAGTTATATGGGGTTTGGTCAGTCCCAAAAGGATATTTGGCAAGCTTGGAGTGTATCCCCAGTTAAATTGGTTCTTCTTGGGTGGAGCAGCTGCTCCAGTTTTAGTTTGGTTGGCACACAAGGCCTTTCCAAAGGTCAAGTGGATTCCTCTGATCAACCTGCCAGTTATGCTGGGATCTACAGCCAATATGCCTCCAGCCACTGCAGTCAACTACACATCCTGGATCACCGTTGGCACCATTTTCAACCATTTTATCTTTAAATATCGGAAGGCTTGGTGGCAGCGTTACAACTATGTGCTCTCTGCAGGCCTTGATGCTGGTTTGGCTTTTATGGCTATACTGCTATACTTTGCTTTGGGTCTGAACAACACATCCATAAACTGGTGGGGAGCAAGTGGGGAACATTGCCCCTTGGCCACCTGCCCCACTGCTAAGGGTGTCAAAGTGGATGGTTGCCCTGTTTATTAATTCTGATCTGATGTAAAATGGATGGATGGTTGCTGTGTTTATTAATTTTGATTTTATCTTTACTGTCTTTGCATTCTGA

Ace file of the UniGene sp_v1.1_unigene10616

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Oligopeptide transporter OPT family n=1 Tax=Populus trichocarpa RepID=B9HN76_POPTR	-	-	72%
FL-Next	sp=Oligopeptide transporter 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	72%
Blast2go	isp4-like protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	oligopeptide transport	GO:0006857	Biological Process	83%
Blast2go	transmembrane transport	GO:0055085	Biological Process	83%
Blast2go	oligopeptide transporter activity	GO:0015198	Molecular Function	83%
Blast2go	membrane	GO:0016020	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Tetrapeptide transporter, OPT1/isp4	IPR004648	-	0.0	83%
Blast2go	Oligopeptide transporter OPT superfamily	IPR004813	-	0.0	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FME8

Fln msg:

Fln protein: MDTSLELSKEEEEENSPVEQVALTVSTEDDPTIPVWTFRMWFLGLLSCVLLSFLNQFFSYRKEPLIITQISVQVAALPLGRFMASALPKRKFRVPVLGKEVSLNPGPFNMKEHVLITIFASAGYAFGNGSAYAVGIVNIIKAFYRRNISFLAAWLIIITTQVLGYGWAGLLRKYVVEPAHMWWPSTLVQVTLFRVLHEKDHGKGMSRNTFFFIAMTCSFCYYVFPGYLFSTLTSVSWVCWIWPHSVTAQQIGSGMNGLGLGAFGFDWSTIAAFLFSPLISPFFAIMNVMVGYVFVVYFAVPLAYWGTNMYNAKAFPIFSSDLFTAQGQNYNISQIVNNKFELDLAAYNQNGQIHMSLFFALTYGFGFATIASTITHVALFYGKEIWQRAVAASKNNRPDIHTKLMRKYPDIPQWWFYTLLLGTLAVAFALCEVYKKEVQLPWWGLLFACALASFFTLPISIITATTNQTPGLNIITEYLMGYILPGKPIANVCFKVYGYMSMSQAVSFLSDFKLGHYMKIPPRSMFLVQFIGTVVAGTVNLGVAWWMLGSVKNICQTDLLSASSPWTCPNDHVFFDASVIWGLVSPKRIFGKLGVYPQLNWFFLGGAAAPVLVWLAHKAFPKVKWIPLINLPVMLGSTANMPPATAVNYTSWITVGTIFNHFIFKYRKAWWQRYNYVLSAGLDAGLAFMAILLYFALGLNNTSINWWGASGEHCPLATCPTAKGVKVDGCPVY*

Protein Length: 735

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTGGTATCTCATATGTCTGCAAGCATATGTGTCTCTGTCTTTGATTGAAATGTTGATTGTTTTAATCAAGATACACAGTTGGTCGTTTCCATCAAGATATACAATTTGATCCCTTTAGTCAAGATAGTTTCTCCTCGTGACCTTGGCAGATCAAAATTATATAAATACAAGAGGTATATGTAGAAAGGGGATGAAGAAGAGTGGTAGTTCAAACATGAACTGGAGTGGATAGATTAACTCAGTTACAGACAAAGATCTCAGCCTATCCTTAGGCCAGGTTAATCAGGTCTAAATAGCTATTTATTGCTGTTAGTGTAGAGAATTAGAGTGGCA_-_ATGGACACATCATTGGAATTGAGTAAAGAGGAAGAGGAGGAGAATTCACCGGTGGAGCAGGTGGCATTGACAGTGAGTACAGAAGACGATCCAACTATTCCTGTATGGACATTTCGAATGTGGTTTCTGGGGCTGCTTTCATGCGTGCTGCTCTCCTTTTTGAACCAGTTCTTCAGTTACAGGAAGGAACCACTTATCATCACACAGATTTCAGTGCAGGTGGCAGCCCTTCCCCTTGGGCGTTTCATGGCCTCGGCTCTGCCAAAGCGGAAATTCAGAGTGCCTGTGTTGGGGAAGGAGGTGTCTCTGAATCCAGGGCCCTTCAATATGAAAGAGCACGTCCTCATCACAATCTTTGCCAGTGCAGGCTATGCCTTCGGCAATGGATCTGCCTATGCTGTGGGTATTGTGAACATCATTAAGGCCTTCTACAGGAGGAATATCTCCTTTTTAGCAGCTTGGCTCATCATAATAACAACTCAGGTGTTAGGATATGGATGGGCTGGACTGCTTCGTAAGTATGTTGTAGAACCTGCACACATGTGGTGGCCAAGCACACTGGTCCAGGTGACCCTGTTCCGGGTACTGCATGAGAAAGACCATGGAAAGGGGATGTCTCGTAATACCTTCTTCTTCATTGCCATGACCTGCAGCTTTTGCTACTATGTATTCCCTGGTTATCTATTCTCAACCCTGACCAGTGTATCGTGGGTGTGCTGGATTTGGCCTCACTCTGTCACAGCACAGCAGATTGGCTCCGGCATGAATGGCCTTGGACTAGGTGCCTTTGGTTTCGATTGGAGCACCATCGCAGCCTTCTTGTTCAGTCCTCTTATTTCTCCATTCTTTGCCATTATGAATGTCATGGTTGGTTATGTCTTCGTAGTATACTTTGCAGTCCCTCTTGCTTACTGGGGCACTAACATGTACAATGCAAAGGCTTTTCCTATTTTCAGCTCGGATTTGTTCACAGCCCAAGGTCAAAACTATAATATTTCACAGATTGTGAACAATAAATTTGAGCTGGATCTTGCTGCTTACAATCAGAATGGTCAAATACATATGAGCTTGTTTTTTGCTCTGACTTATGGGTTTGGATTTGCAACCATTGCTTCTACAATTACCCATGTCGCTCTATTCTATGGGAAGGAAATATGGCAGCGTGCTGTAGCAGCATCCAAAAACAATCGGCCTGATATCCATACTAAATTGATGCGCAAATACCCTGACATCCCACAATGGTGGTTCTACACTCTCTTGTTGGGGACTCTTGCTGTTGCCTTTGCACTCTGCGAGGTTTACAAGAAAGAGGTACAATTACCATGGTGGGGGTTACTTTTTGCCTGTGCTCTCGCTTCATTTTTCACTCTTCCCATAAGTATCATCACCGCTACTACTAATCAGACACCAGGCCTGAACATTATCACCGAATACCTAATGGGATATATCCTTCCTGGGAAGCCTATAGCCAATGTTTGCTTCAAGGTCTATGGTTATATGAGCATGAGCCAAGCAGTTTCTTTCTTGTCAGACTTCAAGCTCGGCCATTACATGAAAATCCCACCACGCTCTATGTTCCTTGTACAGTTTATTGGCACAGTAGTGGCTGGAACAGTCAACCTGGGAGTTGCATGGTGGATGTTGGGATCGGTGAAAAATATATGCCAAACGGATCTTTTGTCTGCAAGTAGCCCATGGACATGTCCCAATGATCATGTGTTCTTCGATGCATCAGTTATATGGGGTTTGGTCAGTCCCAAAAGGATATTTGGCAAGCTTGGAGTGTATCCCCAGTTAAATTGGTTCTTCTTGGGTGGAGCAGCTGCTCCAGTTTTAGTTTGGTTGGCACACAAGGCCTTTCCAAAGGTCAAGTGGATTCCTCTGATCAACCTGCCAGTTATGCTGGGATCTACAGCCAATATGCCTCCAGCCACTGCAGTCAACTACACATCCTGGATCACCGTTGGCACCATTTTCAACCATTTTATCTTTAAATATCGGAAGGCTTGGTGGCAGCGTTACAACTATGTGCTCTCTGCAGGCCTTGATGCTGGTTTGGCTTTTATGGCTATACTGCTATACTTTGCTTTGGGTCTGAACAACACATCCATAAACTGGTGGGGAGCAAGTGGGGAACATTGCCCCTTGGCCACCTGCCCCACTGCTAAGGGTGTCAAAGTGGATGGTTGCCCTGTTTATTAA___TTCTGATCTGATGTAAAATGGATGGATGGTTGCTGTGTTTATTAATTTTGATTTTATCTTTACTGTCTTTGCATTCTGA

Fln Alignment:

sp_v1.1_unigene10616___SPVEQVALTVSTEDDPTIPVWTFRMWXXXXXXXXXXXXXNQFFSYRKEPLIITQISVQVAALPLGRFMASALPKRKFRVPVLGK-EVSLNPGPFNMKEHVLITIFASAGYAFGNGSAYAVGIVNIIKAFYRRNISFLAAWLIIITTQVLGYGWAGLLRKYVVEPAHMWWPSTLVQVTLFRVLHEKDHGKGMSRNTFFFIAMTCSFCYYVFPGYLFSTLTSVSWVCWIWPHSVTAQQIGSGMNGLGLGAFGFDWSTIAAFLFSPLISPFFAIMNVMVGYVFVVYFAVPLAYWGTNMYNAKAFPIFSSDLFTAQGQNYNISQIVNNKFELDLAAYNQNGQIHMSLFFALTYGFGFATIASTITHVALFYGKEIWQRAVAASKNNRPDIHTKLMRKYPDIPQWWFYTLLLGTLAVAFALCEVYKKEVQLPWWGLLFACALASFFTLPISIITATTNQTPGLNIITEYLMGYILPGKPIANVCFKVYGYMSMSQAVSFLSDFKLGHYMKIPPRSMFLVQFIGTVVAGTVNLGVAWWMLGSVKNICQTDLLSASSPWTCPNDHVFFDASVIWGLVSPKRIFGKLGVYPQLNWFFLGGAAAPVLVWLAHKAFPKVKWIPLINLPVMLGSTANMPPATAVNYTSWITVGTIFNHFIFKYRKAWWQRYNYVLSAGLDAGLAFMAILLYFALGLNNTSINWWGASGEHCPLATCPTAKGVKVDGCPV
Q9FME8_______________SPIEEVRLTVTNTDDPTLPVWTFRMWFLGLISCSLLSFLNQFFSYRTEPLVITQITVQVATLPIGHFLAKVLPKTRFGLPGCGSARFSLNPGPFNMKEHVLISIFANAGSAFGSGSAYAVGIITIIKAFYGRSISFIAGWLLIITTQVLGYGWAGLLRKYVVEPAHMWWPSTLVQVSLFRALHEKDDQR-MTRAKFFVIALVCSFGWYIVPGYLFTTLTSISWVCWAFPRSVTAQQIGSGMRGLGLGAFTLDWTAVASFLFSPLISPFFAIANVFIGYVLLIYFVLPLAYWGFDSYNATRFPIFSSHLFTSVGNTYDIPAIVNDNFELDLAKYEQQGRINLSMFFALTYGLGFATIASTLTHVALFYGKEISER-FRVSYKGKEDIHTRLMKRYKDIPSWWFYSMLAATLLISLALCVFLNDEVQMPWWGLVFASAMAFVFTLPISIITATTNQTPGLNIITEYAMGLIYPGRPIANVCFKVYGYMSMAQAVSFLNDFKLGHYMKIPPRSMFLVQFIGTILAGTINITVAWWQLNSIKNICQEELLPPNSPWTCPGDRVFFDASVIWGLVGPKRIFGSQGNYAAMNWFFLGGALGPVIVWSLHKAFPKRSWIPLVNLPVLLGATAMMPPATAVNYNSWILVGTIFNLFVFRYRKSWWQRYNYVLSAAMDAGVAFMAVLLYFSVGMEEKSLDWWGTRGEHCDLAKCPTARGVIVDGCPV

SNPs (tot: 145)

Position	A %	C %	G %	T %	Probability
228	25		75		0.996473
250			83	16	0.994512
251	84	15			0.999986
256	84			15	0.999986
260	84	15			0.999986
352	86	13			0.999973
354	86	13			0.999973
358	13		86		0.999973
360	86	13			0.999973
361	86			13	0.999973
365	86			13	0.999973
366		86	13		0.999973
367	86			13	0.999973
507	7	15	76		0.999983
508		84	15		0.999986
511	23	76			1.0
512		15		84	0.999986
515		83		16	0.999991
516		75	16	8	0.99999
517			16	83	0.999991
518		16		83	0.999991
520			16	83	0.999991
522		16	83		0.999991
524	83	16			0.999991
525		83		16	0.999991
606		85	14		0.993533
648		16	83		0.994512
649			16	83	0.994512
651		20	80		0.995493
653			80	20	0.995493
656	80	20			0.995493
657		20	60		0.99255
658			80	20	0.995493
659	80			20	0.995493
667	20			80	0.995493
691		14		85	0.993533
693	85	14			0.993533
694	85		14		0.993533
695	85			14	0.993533
698		14	85		0.993533
700	85			14	0.993533
701		85		14	0.993533
703			14	85	0.993533
705		85	14		0.993533
755		75	25		1.0
757	75		25		1.0
761		25		75	1.0
762			75	25	1.0
766		25	75		1.0
768	75		25		1.0
770		28		71	1.0
771	28		71		1.0
772		28		71	1.0
773			71	28	1.0
774	71	28			1.0
780	87		12		0.992554
782		12		87	0.992554
783	87		12		0.992554
784	87			12	0.992554
786	12		87		0.992554
789			27	72	1.0
797	63	27		9	1.0
798			70	30	1.0
800		10	90		0.90298
802			90	10	0.90298
803		40	60		1.0
804	71	7		21	1.0
805	71		28		1.0
807	71	21	7		1.0
808	21			78	1.0
812	23	76			1.0
1152		21		78	1.0
1153			15	84	0.999986
1155	7	15	76		0.999983
1158			15	84	0.999986
1159	15			84	0.999986
1162	73	13			0.999956
1164		13		86	0.999973
1167	86	13			0.999973
1168		13	73	13	0.999956
1169		86	13		0.999973
1170	73			26	1.0
1171		86	13		0.999973
1172	13	73	13		0.999956
1173	73	26			1.0
1175		87	12		0.999964
1176			75	12	0.999931
1177	12	87			0.999964
1179			87	12	0.999964
1181	11	88			0.999937
1186		10		90	0.999898
1189		10	5	85	0.999793
1190		90	10		0.999898
1191	85			15	1.0
1193	10			90	0.999898
1200	84	5	10		0.999846
1203	11			88	0.999937
1207	11	88			0.999952
1253	90		9		0.999872
1296	88	8			0.999262
1297	88		4	8	0.999262
1301	88	8		4	0.999262
1303	88	8		4	0.999262
1304		8	92		0.999718
1688	75		25		0.996473
1690		25	75		0.996473
1694	25		75		0.996473
1695		25	75		0.996473
1696		25	75		0.996473
1697			66	33	0.997452
1699			33	66	0.997452
1700	66		33		0.997452
1705		33		66	0.997452
1736			11	83	0.999887
1738		83	16		1.0
1739	11	77	5	5	0.999842
1741	84	10			0.999846
1743	84		5		0.999846
1744	84			15	1.0
1746	5		10	84	0.999846
1747	84	15			1.0
1750	89		10		0.999919
2000	9	4	85		0.999726
2089			16	83	0.999991
2097	83	16			0.999991
2099		83		16	0.999991
2100	83		16		0.999991
2102		16		83	0.999991
2104	81		18		0.999994
2173			11	88	0.999937
2176			11	88	0.999937
2179		20	80		1.0
2180		10	90		0.999898
2182		10	80	10	0.99967
2184	75		5	10	0.999571
2187	90			10	0.999898
2188		10	90		0.999898
2189		90		10	0.999898
2190		10		90	0.999898
2191	10		65	10	1.0
2192		75	10		1.0
2193			25	75	1.0
2197		5	84		0.999846
2200	10	5		84	0.999846
2511		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain