SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10611

Length: 1419 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10611

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to NFU4 (NFU domain protein 4) n=1 Tax=Vitis vinifera RepID=UPI00019858D3	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	iron-sulfur cluster assembly	GO:0016226	Biological Process	87%
Blast2go	copper ion binding	GO:0005507	Molecular Function	87%
Blast2go	iron ion binding	GO:0005506	Molecular Function	87%
Blast2go	structural molecule activity	GO:0005198	Molecular Function	87%
Blast2go	iron-sulfur cluster binding	GO:0051536	Molecular Function	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Blast2go	NIF system FeS cluster assembly, NifU, C-terminal	IPR001075	-	87%
Blast2go	NIF system FeS cluster assembly, NifU-like scaffold, N-terminal	IPR014824	-	87%
Blast2go	HIRA-interacting protein 5	IPR017065	-	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNH0

Fln msg: your sequence is longer than subject: 277 - 181

Fln protein: MLRSLRKFGHNIPRINRNRRSIQSRFSVGCRHLFTASSTPSTNDGNGRVNSLGPSSYRNPWNSMPGQYRSMFIQTQSTPNPLSLMFYPGKPVMEVGSADFPNARVAMGSPLAKALYGIDGVARVFFGSDFITVTKSEEVSWDILKPEIFAAIMDFYSSGKPLFLDSKSGAPTDTTINEDDDETVAMIKELLETRIRPSVQDDGGDIEYRGFDVETGVVKLKMQGACSGCPSSSLTLKSGIENMLMHYVPEVKGVEEELDSEEDDSAELTNNMEQSV*

Protein Length: 278

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGATTCAGTGTCATCCGCGTCTCCACATCGCTCTCCTCGACAAATAAATCAACTCATTTAAAAATGAAAAGAACAATGTCAATTGGTGAAATCTTCGAATTTGATTCTACCTGCCCCAATTTGTTTGGGTGATGGACAGGCATAAGGCGGCGTGACATTGTAATTACATTGCATTAGGACAGCTTATTGTGCTATTATTTTCAATCTAAGTAAATTCTTCGAACAACTTCTTTACTTCTTCAGCGTTGCATCATTCCGACCCCTCAACTCAACTCTGGTGAATTGCTGTTGGAGGTTCCTGTAACTGCAACTCTACTCAGGTTTTTTTCGAA_-_ATGTTGAGGTCTCTTAGGAAATTTGGTCACAATATCCCTCGAATAAACAGAAACAGAAGAAGTATTCAGAGCAGATTTTCTGTTGGCTGCCGCCACTTGTTTACTGCTTCTTCAACACCTTCAACAAATGATGGGAACGGCCGTGTAAATTCACTGGGGCCATCCTCTTACAGAAATCCGTGGAACAGCATGCCTGGTCAATATAGGAGCATGTTTATACAGACCCAGTCAACTCCTAATCCATTATCTTTGATGTTTTATCCTGGAAAGCCAGTCATGGAAGTTGGCAGTGCAGATTTTCCAAATGCACGTGTTGCAATGGGCTCCCCTTTGGCAAAAGCACTCTATGGTATTGATGGTGTTGCACGTGTTTTTTTTGGATCTGATTTCATAACAGTAACAAAATCAGAGGAGGTCTCATGGGATATTTTGAAGCCTGAAATCTTTGCAGCAATCATGGATTTTTATTCATCAGGGAAACCACTGTTTTTGGACTCTAAATCAGGAGCTCCTACAGACACCACCATTAATGAGGATGATGATGAGACGGTTGCCATGATAAAAGAATTGTTAGAGACACGCATACGACCGTCTGTTCAGGATGATGGTGGTGATATTGAATATCGTGGTTTTGATGTGGAAACTGGAGTAGTCAAATTAAAAATGCAAGGGGCTTGTAGTGGCTGCCCTAGCTCCTCACTCACTTTGAAGTCTGGCATTGAGAACATGCTGATGCATTATGTACCTGAGGTTAAAGGAGTAGAAGAAGAATTGGATTCTGAAGAAGATGACTCTGCAGAATTGACCAACAATATGGAACAATCTGTATGA___TTACATGTTGTATCAAGTATGATGGATATTTGAGTAATTGTATCTAATTGCACAAGGGCAACATTCTTTAGCCCAGACTCTGAATATGTGGGTTTTCCTTCAACATAGTTGCCCTATAATTAAATCCGAAATTGTCTTGCTTTTTTTATCTGAGCAGCAAGGGAATAATCCAATGTGTCCACTTTCAATAAAAATTCTATATTCCAGTGTTGTTAAATTTACGTAAATTTT

Fln Alignment:

sp_v1.1_unigene10611___MEVGSADFPNARVAMGSPLAKALYGIDGVARVFFGSDFITVTKSEEVSWDILKPEIFAAIMDFYSSGKPLFLDSKSGAPXXXXXXXXXXXXVAMIKELLETRIRPSVQDDGGDIEYRGFDVETGVVKLKMQGACSGCPSSSLTLKSGIENMLMHYVPEVKGVXXXXXXXXXXXXXXTNNME
A9NNH0_______________MEVGSADFPNARVAMGSPLAKSLYGIDGVARIFFGSDFITVTKSEEVSWDILKPEIFAAIMDFYSSGQPLFLDSKSGAPTDTAINEDDDETVAMIKELLETRIRPAVQDDGGDIEYCGFDPETGVVKLKMQGACSGCPSSSLTLKSGIENMLMHYVPEVKGVEQELDPEEDETAELANNME

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1039		37	62		1.0
1047		63		36	1.0
1049	63		36		1.0
1054		63	36		1.0
1214		8	91		1.0
1353	76			11	0.999894
1400	20			80	0.995493
1407			33	66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain