SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10589

Length: 1058 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10589

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Homeobox protein HAT3.1, putative	-	-	2.0e-30	34%
FL-Next	sp=Homeobox protein HAT3.1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	62%
Blast2go	phd-finger family homeodomain protein	-	-	1.5713e-30	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	1.5713e-30	78%
Blast2go	positive regulation of cellular transcription, DNA-dependent	GO:0045941	Biological Process	1.5713e-30	78%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	1.5713e-30	78%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	1.5713e-30	78%
Blast2go	transcription activator activity	GO:0016563	Molecular Function	1.5713e-30	78%
Blast2go	protein binding	GO:0005515	Molecular Function	1.5713e-30	78%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	1.5713e-30	78%
Blast2go	nucleus	GO:0005634	Cellular Component	1.5713e-30	78%

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
188	75		25		0.996473
274	50		50		1.0
307	75		25		0.996473
357		25		75	0.996473
384	80			20	0.995493
385		75	25		0.996473
386	75		25		0.996473
387	75		25		0.996473
489		60	40		1.0
491	60	40			1.0
492		60	40		1.0
493	60			40	1.0
497	60	40			1.0
498	60			40	1.0
499	60			40	1.0
500		60	40		1.0
501		60	40		1.0
506	60	40			1.0
510		40	60		1.0
511	40		60		1.0
518		20		80	0.995493
551	80		20		0.995493
588	75		25		0.996473
814	20	80			0.995493
817			20	80	0.995493
818		80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain