SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10576

Length: 1040 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene10576 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF868 domain containing protein	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	protein	-	-	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF868, plant	IPR008586	-	0.0	72%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNS3

Fln msg: Separated hits, possible frame ERROR between 539 and 547, Distance to subject end: 25 aas,

Fln protein: MHRMVVSCFADYTDMRTKQNLITCLYQIKLAGSSKLVTVTWSRSLISQDFSVHFNDQESHCMCKVEMKPWFFCNRKGSKSFNVKGNEVFVFWDLSKAQxxxxAQSRMGGFYVALVCDGDLVLLLGDLKQEALKKTKARSLAMEPALLSRREHAFGKKYYATKAQFGEHGKTHDIVIECHTGGGTNQTKEPRLDVRVDKQVVLQVKHLVWKFRGNETIQIDGLPIEVFWDVHNWLFNPSTGHAVFMFQSSMNGRVSCPPAVLQWPNA

Protein Length: 267

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAAATTTTTGTGAACATGGAGAGAGTATGAACAGTCACATTAAATGCCCCAGGACAGGAAGCCTTGCAGAACAGACAGGCAGGAGGGGCCAGTAAAGCACATGGGTTGAAGAAATAGGGATAGCAAGTTGTGGTCCTAGAGGGTGAGGACGAAAAGCGCTTGCCCATATTCTGGTTTTGTTGAGATGGATGCATTTTATTCCCAGCATCTGTAGTAA_-_ATGCATCGGATGGTTGTTTCATGCTTCGCAGATTACACAGATATGAGGACAAAACAGAACTTGATCACTTGCCTGTATCAGATAAAGCTCGCAGGCTCATCCAAGCTTGTGACTGTAACATGGTCCAGAAGTCTGATAAGCCAGGACTTTAGTGTACATTTCAATGACCAAGAGAGCCATTGCATGTGTAAAGTTGAAATGAAGCCCTGGTTCTTCTGTAACAGGAAAGGATCCAAGAGCTTCAATGTGAAAGGAAATGAGGTCTTTGTGTTTTGGGATCTCAGCAAAGCTCAATAxxxxxxxxxGGCCCAGAGCCGCATGGGGGGCTTCTATGTGGCCCTGGTCTGTGATGGGGATCTTGTTTTATTGCTTGGGGACTTGAAGCAAGAAGCCCTAAAGAAGACCAAAGCCAGATCGCTGGCCATGGAGCCTGCATTGTTGTCTAGGAGAGAACATGCATTTGGTAAGAAGTATTATGCAACAAAAGCCCAGTTTGGAGAACATGGGAAGACTCATGACATCGTTATAGAATGTCATACAGGAGGAGGGACTAACCAAACTAAGGAGCCAAGGTTGGATGTGAGAGTTGATAAGCAAGTTGTGCTGCAAGTTAAGCATCTGGTGTGGAAGTTTAGAGGGAATGAGACTATACAGATTGATGGGCTTCCTATTGAAGTGTTTTGGGATGTCCATAACTGGCTTTTTAATCCAAGCACAGGTCATGCAGTCTTCATGTTTCAGTCCTCAATGAATGGCAGGGTGTCATGCCCTCCTGCTGTTTTACAGTGGCCTAATGCACT

Fln Alignment:

sp_v1.1_unigene10576___QNLITCLYQIKLAGSSKLVTVTWSRSLISQDFSVHFNDQESHCMCKVEMKPWFFCNRKGSKSFNVKGNEVFVFWDLSKAQYxxxAQSRMGGFYVAXXXXXXXXXXXXXLKQEALKKTKARSLAMEPALLSRREHAFGKKYYATKAQFGEHGKTHDIVIECHTGGGTNQTKEPRLDVRVDKQVVLQVKHLVWKFRGNETIQIDGLPIEVFWDVHNWLFNPSTGHAVFMFQSSMNGRVSCP
B8LNS3_______________QNMVTCLYLTTLSGQTRLITVTWCKNLMGQGLSVNVDDPSYQCLCRVDMKSWLFWKKKGSKRFELGTTKVDVFWDLSSARYxxxAPEPLEGYFVAVVSNEEVALLLGDMCKEAFKKTHAKPPA-ETVLISRKEHVFGKNCYTTKAQFCNSGRIHDIVIECQTGG----PREPKLCVRIDKQLVVQVKHLIWKFRGNQTISVDGLPIEMFWDVHDWLFNPSLGHAVFMFKTITSGEVQEP

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
684		87		12	0.992554
743		14		85	0.993533
770		28	71		1.0
772		28	71		1.0
773	85	14			0.993533
774	85			14	0.993533
775			85	14	0.993533
776		83		16	0.994512
813		25	75		0.996473
814		25	75		0.996473
815		25	75		0.996473
837	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain