SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10562

Length: 1134 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10562

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cyclin-dependent kinase F-1 n=3 Tax=Arabidopsis RepID=CDKF1_ARATH	-	-	3.0e-14	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	cdk-activating kinase cak1at	-	-	0.0	61%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	61%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	61%
Blast2go	maintenance of root meristem identity	GO:0010078	Biological Process	61%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	61%
Blast2go	cyclin-dependent protein kinase activating kinase activity	GO:0019912	Molecular Function	61%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	61%
Blast2go	ATP binding	GO:0005524	Molecular Function	61%
Blast2go	protein binding	GO:0005515	Molecular Function	61%
Blast2go	cytosol	GO:0005829	Cellular Component	61%
Blast2go	nucleus	GO:0005634	Cellular Component	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase-like domain	IPR011009	-	0.0	61%

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
462	25		75		0.996473
467			50	50	1.0
491	90	10			0.90298
492			10	90	0.90298
496		10		50	1.0
502			10	90	0.90298
505			10	90	0.90298
507		10		90	0.90298
508	10		90		0.90298
512	10		90		0.90298
531		90	10		0.90298
608	60			40	1.0
642		40	60		1.0
694		60		40	1.0
700		60		40	1.0
718			14	85	0.993533
720	85			14	0.993533
726	14			85	0.993533
740	14		85		0.993533
767	14		85		0.993533
840			14	85	0.993533
911	75			25	1.0
999		25	75		1.0
1048			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain