SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10530

Length: 3635 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene10530
ATGGGGGTTGTCGGACACTTTTCAATGCGTGCATAAAATGGACACTAAAACTCAGGTCTGGCTATGGCGGACAAGGGTTCCAGATACGAATTTCCATGGAGTGTTCTGATCCCTTTCAGTTCCTTACAGCCGTTCCGGTCCTTAGTTCATGTAGAATTTCGGATTTCTCACCCTGCAAAACGTCAGGCGTGATCTTCGCCGTATATCGCAATTCGATCTGATCCGGGAAATATCTGGATCGAGGTCAAGAGAGCATCAGAACCCTAGAAATATCTCTCGATTTACGGGGAGGGAACCGATCGGTGAAGGGAGTAATAAGGATTGTGGGAAATTTGAGCTGGATTATTCGAAAATACAGGATTATATGGGCTGGGTGTCTGCTTGATACAACAAAGTGATCAGTTAAAGAGTGAAAAAATGGGATCGTTAAAACCCTCAATGCGTTCGAGAGCCTTGGCTCCTTCAGGTCCTGCTATTGCCAATGGCACCGTGCACGGGGATGGCGCCCTTCTCTCAGACAAATTAAAGGTTTTCAAAGGAGATAATTTTGACGCAGACGGCTATGTTCAGCTTAAATGCCAGTCTATGAATGAGAAGGAAATTAGGCAATTATGCACCCATCTTCTAGAACTCAAGAAGGCATCCGCTGAAGAAATGCGCAAAAGTGTATATGCTAATTATTCTGCATTTATCCGTACTTCAAAAGAAATATCAGATCTTGAAGGAGAACTCCTTTCAATTAGAAATTTGCTTTCTACTCAGGCTGCACTAATTCATGGGCTGGCAGAGGGTGTTCATATGGATTCGTTATCTAATAGTACTGGAGTTTCCTCAATTCAGGACTCTCCTGTTTCTGAAGAACATGAACCTTCAGACTTAGAGAAATGGGCCCTTGAGTTTCCTGATGTTCTGGATGTTCTTTTAGCGGAACGAAGAGTGGATGAGACATTAGCTGCACTAGATGAAGGTGAGCAGGTGGTTGCAGATGCACAACAGAAGGGGACTTTAAATCCATCTGCATTCTCCGCATTGCAAAATACTATTTCTGATTGTAGAAGTCAGCTGGCAGAGCAGCTTGCTGAAGCTGCTCACCAACCATCAACTCGTGGTGCTGAACTTCGTGCAGCAATATCTGCCCTCAAAAGACTTGGTGATGGCCCTCGTGCACATACACTGCTCCTTAATGCTCATTACCAACGTTTTCAGTACAATATGCAAAGTTTGCGGCCATCCAATACTTCATATGGTGGGGCATACACTGCAGCCCTTTCGCAACTTGTCTTTTCTACTATAGCACAAGCTACAAGTGATTCTGTGGCTGTGTTTGGGGAGGAATCAGCTTATGCATCAGAGCTTGTAATGTGGTCTACCAAGCAAACAGAGGACTTTGCACTTCTCGTGAAGAGACATGCATTAGCTTCCTCAGCAGCTGCTGGAGGACTTCGGGCTGCTGCAGAATGTGTCCAAATAGCTTTAGGTCATTGCTCTTTGCTAGAAGCTCGGGGCTTGGCTCTGTGTCCTGTTCTATTAAAGCTGTTTAGACCCAGTGTAGAACAAGCATTGGAGGCCAATTTAAAACGAATAGAGGAGAGCACCGCTGCCCTTGCTGCTGCTGATGATTGGGTGTTAACTCATTCACCTGCTGCTACCAGATTATTTGGTCGAGCTTCAAATGCTTCGACTGGTAGTATTGGATTCCAGCTGAAGCTTTCAAGCAGTGCACACAGGTTCAATTCCATGGTTCAGGAGTTTTTTGAAGATGTAGCACCCCTTTTAAGCATGCAACTTGGAGGACCAACCTTGGATGGTCTTGCACAAGTTTTCAATTCCTATGTTAGCTTGTTAATCAAGGCTTTGCCAGGTTCAATTGAGGAGGATGGCAGCATTGAGGTATCAGGTAATAGAATTGTGAGACTAGCAGAGACTGAGACCCAACAGATTGCTCTCCTAGGAAATGCAGCAGCACTGGCAGATGAATTGCTACCACGTGCTGCCTTAAAACTTGTCCCTTCCCACCAAGCGAGTGGAAAAGAAGATCCTTGGAAGCGATCCTCTGAAAGGCAGAACCGTCTTCCTGAACAGAGAGAATGGAGACGGCGTTTGCAGCGGACTGTAGAAAGATTACGTGATAATTTCTGCAGGCAACATGCTCTAGATTTGATATTTACTGAAGATGGTGAGACACAGTTAAGTGCAGAGTTGTATATCAATTTGGATGACAACACTGACAATTCAGATTGGCATCAAGATCCTTTCCCTTCCCCGATATTTCAGGAGCTCTTTGCCAAATTGGACAGGTTGTTGCACATTGCAACAGAGATGCTACCTGGCAGAGAAAGGGTCATCACGTTATTGTTAATGAGGCTCACCGAGACTGTTATAATTTGGCTCTCTGATGATCAGACTTTCTGGGAGGACATTGAAGATGGTCCGAAGCCCTTGGGGCCTGTAGGTTTGCAGCAGTTTGTGTTGGATATGCAGTTTGTTATTCAGTTTGCGTCTCAAGGGCGCTACTTTTCAAGACACATGCATCAAGTAATTAAGGACATCATTCTGAGAGCCATGAATGCCTTTGCTAGCAGTGGGATGGATCCAAACAGTTTATTGCCTGAAGACGACTGGTTTGTCGATGTTGCCCATGAAGCCATTCTTAAACTAACTGGAAGACCAACAAGAAGTGTTAATGGGGATCGAGAACCGAACAGTCCTACAGCATCTGTATCAGCACAATCCATGTCTTCAGTGAGGTCACATGGAAGTTCATAATACCATAGTAATTTTTGTATTGGTACTTTGGAGTTCCAGGGAACACGTCACTTTTGTCACCCTTTCCCGAATCAGTCTTTCAGCTATTAAAGGATATTGTTCAAGAAAATGTGCAATTTACAATAGCCAATATTATCTATTCAAATGGGAGATTTCAATGTTCTTTTTATAATTTGTATGATTTTGGAAGTGTTTGTAGAATTCATTTAAACTTGGACAGCTTTTCAAGGGTTCAGTATAAAGTGGAACATGAGTGCATGTATACACCAGACTGGAGAAAGGAGTCAGTTTTTTCTAAAGCTGTTGTTTTGGAAGATCAACTGTAAAAGTGATAGCAAGCTCACCTGGAGGAGATTTAATTTATTGGTATTTAGTGGATGGATGGTTTGATTCTTGAGAGATACATGATTGGTAATAATAACCTTTGTGCAATGGCACAAAACAGGCTGCCTTTTGTTGCCTTCTGTGCAAAGAGCCTGGATAGTGCTATACTGAAGAAACTCTTTGTATATTACTGAGAATTTTCTTAGGCCACAACACCTCCAGAACAAAATATTCTAGTGCATCAGAAACTAAGACTGAACTGCTTTTGTTGATTGTAAATATTCTTCCATACAGTTGATTTGAATACCGTGGTCATTGTTGTACTGTCTTGCAATGTGCTGGCTTGGGATTGTCAATAAATCTCTTCTACCTGAGAATTTTAGATTGTAAAGGTGTTTCCAGGTAATGGTTCTGGGCCTGATTCCTTCGTCAAAATTTATTTTGAACATCCAATATTTTGTTACTAGTACATTTAATGATTTGAACGTTTGCTGAGTTAAAGTTCCAGCTGGATGTGTATCCACTTTGTTTTGTTTTGTGAAGAT

Ace file of the UniGene sp_v1.1_unigene10530

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Vps51 domain containing protein	-	-	1.0e-14	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	protein	-	-	0.0	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytosol	GO:0005829	Cellular Component	0.0	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Vacuolar protein sorting-associated protein 51	IPR014812	-	0.0	81%
Blast2go	Cullin repeat-like-containing domain	IPR016159	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPY0

Fln msg: Overlapping hits, possible frame ERROR between 1285 and 1270,

Fln protein: MALVHIHCSLMLITNVFSTICKVCGHPILHMVGHTLQPxxxxxxxTIAQATSDSVAVFGEESAYASELVMWSTKQTEDFALLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLLKLFRPSVEQALEANLKRIEESTAALAAADDWVLTHSPAATRLFGRASNASTGSIGFQLKLSSSAHRFNSMVQEFFEDVAPLLSMQLGGPTLDGLAQVFNSYVSLLIKALPGSIEEDGSIEVSGNRIVRLAETETQQIALLGNAAALADELLPRAALKLVPSHQASGKEDPWKRSSERQNRLPEQREWRRRLQRTVERLRDNFCRQHALDLIFTEDGETQLSAELYINLDDNTDNSDWHQDPFPSPIFQELFAKLDRLLHIATEMLPGRERVITLLLMRLTETVIIWLSDDQTFWEDIEDGPKPLGPVGLQQFVLDMQFVIQFASQGRYFSRHMHQVIKDIILRAMNAFASSGMDPNSLLPEDDWFVDVAHEAILKLTGRPTRSVNGDREPNSPTASVSAQSMSSVRSHGSS*

Protein Length: 539

Fln nts: ATGGGGGTTGTCGGACACTTTTCAATGCGTGCATAAAATGGACACTAAAACTCAGGTCTGGCTATGGCGGACAAGGGTTCCAGATACGAATTTCCATGGAGTGTTCTGATCCCTTTCAGTTCCTTACAGCCGTTCCGGTCCTTAGTTCATGTAGAATTTCGGATTTCTCACCCTGCAAAACGTCAGGCGTGATCTTCGCCGTATATCGCAATTCGATCTGATCCGGGAAATATCTGGATCGAGGTCAAGAGAGCATCAGAACCCTAGAAATATCTCTCGATTTACGGGGAGGGAACCGATCGGTGAAGGGAGTAATAAGGATTGTGGGAAATTTGAGCTGGATTATTCGAAAATACAGGATTATATGGGCTGGGTGTCTGCTTGATACAACAAAGTGATCAGTTAAAGAGTGAAAAAATGGGATCGTTAAAACCCTCAATGCGTTCGAGAGCCTTGGCTCCTTCAGGTCCTGCTATTGCCAATGGCACCGTGCACGGGGATGGCGCCCTTCTCTCAGACAAATTAAAGGTTTTCAAAGGAGATAATTTTGACGCAGACGGCTATGTTCAGCTTAAATGCCAGTCTATGAATGAGAAGGAAATTAGGCAATTATGCACCCATCTTCTAGAACTCAAGAAGGCATCCGCTGAAGAAATGCGCAAAAGTGTATATGCTAATTATTCTGCATTTATCCGTACTTCAAAAGAAATATCAGATCTTGAAGGAGAACTCCTTTCAATTAGAAATTTGCTTTCTACTCAGGCTGCACTAATTCATGGGCTGGCAGAGGGTGTTCATATGGATTCGTTATCTAATAGTACTGGAGTTTCCTCAATTCAGGACTCTCCTGTTTCTGAAGAACATGAACCTTCAGACTTAGAGAAATGGGCCCTTGAGTTTCCTGATGTTCTGGATGTTCTTTTAGCGGAACGAAGAGTGGATGAGACATTAGCTGCACTAGATGAAGGTGAGCAGGTGGTTGCAGATGCACAACAGAAGGGGACTTTAAATCCATCTGCATTCTCCGCATTGCAAAATACTATTTCTGATTGTAGAAGTCAGCTGGCAGAGCAGCTTGCTGAAGCTGCTCACCAACCATCAACTCGTGGTGCTGAACTTCGTGCAGCAATATCTGCCCTCAAAAGACTTGGTG_-_ATGGCCCTCGTGCACATACACTGCTCCTTAATGCTCATTACCAACGTTTTCAGTACAATATGCAAAGTTTGCGGCCATCCAATACTTCATATGGTGGGGCATACACTGCAGCCCxxxxxxxxxxxxxxxxxxxxxACTATAGCACAAGCTACAAGTGATTCTGTGGCTGTGTTTGGGGAGGAATCAGCTTATGCATCAGAGCTTGTAATGTGGTCTACCAAGCAAACAGAGGACTTTGCACTTCTCGTGAAGAGACATGCATTAGCTTCCTCAGCAGCTGCTGGAGGACTTCGGGCTGCTGCAGAATGTGTCCAAATAGCTTTAGGTCATTGCTCTTTGCTAGAAGCTCGGGGCTTGGCTCTGTGTCCTGTTCTATTAAAGCTGTTTAGACCCAGTGTAGAACAAGCATTGGAGGCCAATTTAAAACGAATAGAGGAGAGCACCGCTGCCCTTGCTGCTGCTGATGATTGGGTGTTAACTCATTCACCTGCTGCTACCAGATTATTTGGTCGAGCTTCAAATGCTTCGACTGGTAGTATTGGATTCCAGCTGAAGCTTTCAAGCAGTGCACACAGGTTCAATTCCATGGTTCAGGAGTTTTTTGAAGATGTAGCACCCCTTTTAAGCATGCAACTTGGAGGACCAACCTTGGATGGTCTTGCACAAGTTTTCAATTCCTATGTTAGCTTGTTAATCAAGGCTTTGCCAGGTTCAATTGAGGAGGATGGCAGCATTGAGGTATCAGGTAATAGAATTGTGAGACTAGCAGAGACTGAGACCCAACAGATTGCTCTCCTAGGAAATGCAGCAGCACTGGCAGATGAATTGCTACCACGTGCTGCCTTAAAACTTGTCCCTTCCCACCAAGCGAGTGGAAAAGAAGATCCTTGGAAGCGATCCTCTGAAAGGCAGAACCGTCTTCCTGAACAGAGAGAATGGAGACGGCGTTTGCAGCGGACTGTAGAAAGATTACGTGATAATTTCTGCAGGCAACATGCTCTAGATTTGATATTTACTGAAGATGGTGAGACACAGTTAAGTGCAGAGTTGTATATCAATTTGGATGACAACACTGACAATTCAGATTGGCATCAAGATCCTTTCCCTTCCCCGATATTTCAGGAGCTCTTTGCCAAATTGGACAGGTTGTTGCACATTGCAACAGAGATGCTACCTGGCAGAGAAAGGGTCATCACGTTATTGTTAATGAGGCTCACCGAGACTGTTATAATTTGGCTCTCTGATGATCAGACTTTCTGGGAGGACATTGAAGATGGTCCGAAGCCCTTGGGGCCTGTAGGTTTGCAGCAGTTTGTGTTGGATATGCAGTTTGTTATTCAGTTTGCGTCTCAAGGGCGCTACTTTTCAAGACACATGCATCAAGTAATTAAGGACATCATTCTGAGAGCCATGAATGCCTTTGCTAGCAGTGGGATGGATCCAAACAGTTTATTGCCTGAAGACGACTGGTTTGTCGATGTTGCCCATGAAGCCATTCTTAAACTAACTGGAAGACCAACAAGAAGTGTTAATGGGGATCGAGAACCGAACAGTCCTACAGCATCTGTATCAGCACAATCCATGTCTTCAGTGAGGTCACATGGAAGTTCATAA___TACCATAGTAATTTTTGTATTGGTACTTTGGAGTTCCAGGGAACACGTCACTTTTGTCACCCTTTCCCGAATCAGTCTTTCAGCTATTAAAGGATATTGTTCAAGAAAATGTGCAATTTACAATAGCCAATATTATCTATTCAAATGGGAGATTTCAATGTTCTTTTTATAATTTGTATGATTTTGGAAGTGTTTGTAGAATTCATTTAAACTTGGACAGCTTTTCAAGGGTTCAGTATAAAGTGGAACATGAGTGCATGTATACACCAGACTGGAGAAAGGAGTCAGTTTTTTCTAAAGCTGTTGTTTTGGAAGATCAACTGTAAAAGTGATAGCAAGCTCACCTGGAGGAGATTTAATTTATTGGTATTTAGTGGATGGATGGTTTGATTCTTGAGAGATACATGATTGGTAATAATAACCTTTGTGCAATGGCACAAAACAGGCTGCCTTTTGTTGCCTTCTGTGCAAAGAGCCTGGATAGTGCTATACTGAAGAAACTCTTTGTATATTACTGAGAATTTTCTTAGGCCACAACACCTCCAGAACAAAATATTCTAGTGCATCAGAAACTAAGACTGAACTGCTTTTGTTGATTGTAAATATTCTTCCATACAGTTGATTTGAATACCGTGGTCATTGTTGTACTGTCTTGCAATGTGCTGGCTTGGGATTGTCAATAAATCTCTTCTACCTGAGAATTTTAGATTGTAAAGGTGTTTCCAGGTAATGGTTCTGGGCCTGATTCCTTCGTCAAAATTTATTTTGAACATCCAATATTTTGTTACTAGTACATTTAATGATTTGAACGTTTGCTGAGTTAAAGTTCCAGCTGGATGTGTATCCACTTTGTTTTGTTTTGTGAAGAT

Fln Alignment:

sp_v1.1_unigene10530___MALVHIHCSLMLITNVFSTICKVCGHPILHMVGHTLQPFxxxxxSTIAQATSDSVAVFGEESAYASELVMWSTKQTEDFALLVKRHXXXXXXXXXXXXXXXECVQIALGHCSLLEARGLALCPVLLKLFRPSVEQALEANLKRIEESTAALAAADDWVLTHSPAATRLFGRASNASTGSIGFQLKLSSSAHRFNSMVQEFFEDVAPLLSMQLGGPTLDGLAQVFNSYVSLLIKALPGSIEEDGSIEVSGNRIVRLAETETQQIALLGNAAALADELLPRAALKLVPSHQASGKEDPWKRSSERQNXXXXXXXXXXXXXXXXXXXXDNFCRQHALDLIFTEDGETQLSAELYINLDDNTDNSDWHQDPFPSPIFQELFAKLDRLLHIATEMLPGRERVITLLLMRLTETVIIWLSDDQTFWEDIEDGPKPLGPVGLQQFVLDMQFVIQFASQGRYFSRHMHQVIKDIILRAMNAFASSGMDPNSLLPEDDWFVDVAHEAILKLTGRPTRSVNGDREPN
B8LPY0_______________MALVRTHCYLMLITNVFSTICKVCGHPTLHMVGHTLQPFxxxxxSAIAQAASDSVAVFGEESAYASELVMWSTKQTEDFALLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLLKLFRPSVEQALEANLKRIEESTAALAAADDWVLTHSPATTRLFGRASNTSTGGIGFQLKLTSSAHRFNSMVQEFFEDVAPLLSMQLGGLTLDGLAQVFNSYVSLLIKALPGSIEEDGSMEVSGNKIVRLAETETQQIALLGNAAALADELLPRAALKLAPPHQASGKEDPWKRSSERQNRLPEQRDWRRRLQRTVERLRDNFCRQHALDLIFTEDGDTQLSAEMYINLDDNTDNSDWHQDPFPSLIFQELFAKLDRLLHIATEMLPGRERVITLFLMRLTETVIIWLSDDQTFWEDIEDGPKPLGPVGLQQFVLDMQFVIQFASQGRYFSRHMHQVIKDIILRAMNAFASSGMDPNSVLPEDDWFVDVAHEAILKLTGR-SRSANGDREPN

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
138	20	80			0.995493
299		66		33	0.997452
1260		60		40	1.0
1306	50		50		1.0
1352		83	16		0.994512
1353	83		16		0.994512
1527		11		88	0.923564
1742	72			27	1.0
1747			30	70	1.0
1748		10		30	1.0
1752			66	33	1.0
1753		33	66		1.0
1997	10		90		0.90298
2144		22		77	0.999999
2146		77		22	0.999999
2147	66	22	11		0.999999
2149			77	22	0.999999
2150		77	22		0.999999
2152	77	22			0.999999
2154	77			22	0.999999
2160		77	22		0.999999
2163		22	77		0.999999
2166		22		77	0.999999
2168		25	75		1.0
2251	87		12		0.992554
2254	87		12		0.992554
2255	87			12	0.992554
2263			14	85	0.993533
2264		85	14		0.993533
2266		85		14	0.993533
2267			14	85	0.993533
2270	14	85			0.993533
2272		85		14	0.993533
2273		14	85		0.993533
2363	87		12		0.992554
2820		14		85	0.993533
2833	85		14		0.993533
3365		12		75	0.975346
3400		16	83		0.994512
3434	16		83		0.994512
3444	16		83		0.994512
3445		33	66		1.0
3451	20			80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
3615	3629	TTTGT TTTGT TTTGT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain