SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10529

Length: 1204 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10529

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NHL25; NHL25 (NDR1/HIN1-LIKE 25)	-	-	1.0e-31	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Blast2go	nhl25 (ndr1 hin1-like 25)	-	-	1.01679e-31	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	1.01679e-31	61%
Blast2go	defense response, incompatible interaction	GO:0009814	Biological Process	1.01679e-31	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYU7

Fln msg: your sequence is shorter than subject: 198 - 268

Fln protein: RRDLGRRDLGCHSFSCPSILLIVLIAIAAGVFYIVFRPQIPKYSLNGISVQRFNISQDLRLSSDLIVTVRAQNSNKKIGIFYDDGNRLAVLYSGRVISSGVIPAFYQAPRKTTLVRIKMTASRVPFSAALKSALDTDQTKGSVPLYVEMDEPVRLKFGSLKTPKVTIQLRCKLTVNQLTAKRKVRIQQQSCSIRIKL*

Protein Length: 199

Fln nts: CGTCGTGACCTTGGCCGTCGTGACCTTGGCTGTCACTCATTTTCGTGCCCCTCGATCCTCCTCATCGTGCTGATAGCCATTGCCGCCGGCGTCTTCTACATAGTTTTCCGGCCTCAGATTCCGAAATACTCACTGAACGGAATTTCCGTCCAACGATTCAACATCAGTCAGGACCTGCGTCTCAGCTCCGATCTGATAGTGACGGTTCGAGCCCAGAATTCCAACAAAAAGATTGGAATTTTCTACGACGACGGAAACCGGCTAGCCGTGCTGTATTCCGGGAGGGTGATTAGTTCGGGCGTCATTCCGGCGTTCTACCAAGCTCCCCGGAAAACCACCCTTGTGCGGATAAAGATGACGGCTTCCAGAGTCCCGTTCTCTGCTGCCCTGAAATCCGCCCTGGATACAGATCAGACCAAGGGCAGCGTGCCGCTGTACGTGGAGATGGACGAGCCCGTCCGCCTAAAATTCGGCAGCCTGAAAACCCCCAAAGTCACCATCCAACTCCGGTGTAAGTTGACGGTAAACCAGCTGACGGCGAAACGGAAAGTTCGGATCCAACAACAGAGCTGCAGCATCAGAATCAAGCTGTGA___ATAAACCGGCGGCCGCATTTTCGTTATTATTTTTGGGATTTAAAATGCTCCGCTATTAATCGCCGGAATGGGTTAATTTAGCATTCTGTGAAATTAATCAATTAACAGATTTTAATCCATTTTTTCAATAATAATAACTTTTCAACGGGCCTAAGCTGCCTAATTTATTTGTCTTTCTCAAAACTGAATTAGATCCAATAATATTGGAGCTAATTTTGCAAGTATACTTGCAATATAGTTTGAGAATAGTTATTTGTTTTTGTTTTTTCTTATATTTGGGCGAAGGAATTTGGGCAAAAAGATTTCAAGAAATCTTGCGTAGCAGTGTTTGAATCATGTTTTTGATAATGGAAATGAATTCAGTGTCTTTTTTACCATGGAAATGAATTCAGCGTTATCAAAAACCTCTGAAACACCCAAAATCTTGAAATTTAAAATTCGACAACTGTAACTTGGATTTATAAAATCCTTGACAAATTTTATCAAAATATTGCCAAACTTTTTATGATTTTCACACTATCTGACTACTATTTCCAGTGATGGAGAGGTAGAATGTAAAAATATCTTATTAAAAATTTACATACTTATATGCTTCTACATAAGAAATTCC

Fln Alignment:

sp_v1.1_unigene10529___GVFYIVFRPQIPKYSLNGISVQRFNISQDLRLSSDLIVTVRAQNSNKKIGIFYDDGNRLAVLYSGRVISSGVIPAFYQAPRKTTLVRIKMTASRVPFSAALKSALDTDQTKGSVPLYVEMDEPVRLKFGSLKTPKVTIQLRCKLTVNQLTAKRKVRIQQQSCSIRI
A9NYU7_______________GILYLVFQPRIPKYSVDGIRITNFSINADLSTNCQFTVNVRARNPNKKIGIYYLDNSHLAVSYMGTELCTGTLPVFYQGHKNTTVLDVALSRTGARLTSAVVSTLKEQQQKASVPLNLKADVPVKIKLGNLKSMKIKVRVRWDLVVDRLDASAKVITDKSKVSVKL

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
22	25		75		0.996473
23	50	50			1.0
24		50		50	1.0
25		75	25		0.996473
26	25	25		50	0.995533
29		50	50		1.0
31			20	80	0.995493
32		40	40	20	1.0
33		20	40	40	1.0
34		80	20		0.995493
35	40			60	1.0
36		40	20	40	1.0
37	20		40	40	1.0
38		60	40		1.0
39	80	20			0.995493
40	20			80	0.995493
41		45		54	1.0
42			45	54	1.0
48	36	45		9	1.0
51	9		45		1.0
52		63		36	1.0
54		63	36		1.0
55	18		36		1.0
56	63	36			1.0
59		63	36		1.0
77	78	7	14		0.999974
78	14		85		0.999981
81	78			14	0.999974
83			14	85	0.999981
86		85		14	0.999981
88		78		21	1.0
90	14		85		0.999981
91		14	85		0.999981
92		85		14	0.999981
93	14		85		0.999981
439	85			14	0.993533
447	90		10		0.90298
448			10	90	0.90298
449			90	10	0.90298
456		88	11		0.923564
652	77	22			0.999999
653			22	77	0.999999
655	77		22		0.999999
657		22		77	0.999999
659			77	22	0.999999
660		77		22	0.999999
661		77	22		0.999999
663		22	77		0.999999
664	77			22	0.999999
665	77		22		0.999999
667		22	77		0.999999
668	22		77		0.999999
669		22	77		0.999999
671		22		77	0.999999
720		11		88	0.923564
721			11	88	0.923564
868		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain