SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10498

Length: 748 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene10498 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	binding protein	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	68%
Blast2go	multicellular organismal development	GO:0007275	Biological Process	68%
Blast2go	circumnutation	GO:0010031	Biological Process	68%
Blast2go	microtubule binding	GO:0008017	Molecular Function	68%
Blast2go	cortical microtubule, transverse to long axis	GO:0010005	Cellular Component	68%

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
217			10	90	0.90298
219			90	10	0.90298
382	16		83		0.999991
469		88	11		0.923564
470	11			88	0.923564
473			12	87	0.992554
477	12	87			0.992554
479			87	12	0.992554
480		85	14		0.993533
481	85			14	0.993533
482	85	14			0.993533
485	85		14		0.993533
487		14		85	0.993533
488	85		14		0.993533
494		16		83	0.994512
495		16		83	0.994512
531		87		12	0.992554
532		87	12		0.992554
534			12	87	0.992554
538	87		12		0.992554
540	14		85		0.993533
549	80		20		0.995493
550	80		20		0.995493
551		80		20	0.995493
553	20	80			0.995493
555	80		20		0.995493
557		25		50	0.995533
558	75	25			0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain