SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10496

Length: 1214 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene10496 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein phosphatase 2c, putative (EC:3.1.3.16)	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	protein phosphatase	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	red light signaling pathway	GO:0010161	Biological Process	86%
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	86%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	86%
Blast2go	nucleus	GO:0005634	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein phosphatase 2C-like	IPR001932	-	0.0	86%
Blast2go	Protein phosphatase 2C	IPR015655	-	0.0	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV16

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 235 - 298

Fln protein: GGLSCCRVHSDQRP*LGLYAIFDGHLGDTVAAYLQKNLFANILSEEEFWVHPSRSIMKAYDKTDKAILIHSPDLARGGSTAVTAILIDSLKLLVANVGDSRAVLSKNGRAIQLSVDHEPSTERGSIENRGGFVSNIPGDVPRVNGQLAVSRAFGDRSLKTHLRSDPDVKEWDVDSETQFLILASDGLWKVMDNQEAVNFVSKIRDPQIAAKQLTAEAVKRESKDDISCIVVQFK*

Protein Length: 236

Fln nts: ATGGAGGATTATCATGTTGCAGAGTTCACTCAGATCAACGGCCATGATTGGGTTTATATGCTATTTTTGATGGCCATTTAGGTGACACTGTGGCTGCGTACCTGCAGAAGAATTTGTTTGCAAACATTTTGAGTGAGGAAGAATTCTGGGTTCATCCATCTAGGTCCATAATGAAAGCCTATGATAAGACAGACAAGGCCATTCTTATACACTCTCCTGACTTGGCCCGAGGAGGTTCCACTGCTGTTACAGCTATCCTGATAGATAGCCTAAAACTTTTGGTTGCAAATGTTGGTGACTCCAGAGCAGTTTTGAGCAAAAATGGGAGAGCTATTCAGCTCTCAGTTGATCATGAACCTAGTACAGAACGTGGAAGCATTGAGAATAGGGGTGGTTTTGTCTCAAACATTCCAGGAGATGTGCCAAGGGTAAATGGGCAGCTTGCAGTTTCTCGAGCTTTTGGAGATAGAAGTCTTAAGACACATCTAAGGTCAGATCCTGATGTGAAAGAATGGGATGTCGATTCAGAAACACAGTTTCTAATTCTGGCCAGTGATGGTTTATGGAAGGTGATGGATAATCAGGAAGCTGTCAATTTTGTTAGTAAGATCAGGGATCCACAAATAGCAGCAAAGCAATTAACAGCGGAAGCTGTGAAACGAGAAAGCAAGGATGATATATCATGTATTGTAGTTCAGTTTAAATGA___TTGCTAGCTTGCTAAGGGACACGCACTTTTATCAGCATCAGATCCACATGGCGATTTGGATAGCAGCATATATTAAAAATGCTGGTCAGGAGTCCTGAGTGGCCTGGTGGATGCAATTTATGCCACTGTTTTATACCTAAAGCTAACAATGGTTTCAGTCTAGAAAAATGAGGCCTAGGAAAGCCTGAAAACCCATAATCTTTCAATATACCCACAATTTCTGTATGGTTATCGTCTTTTCTATATTGTAACAAAGTTCTCGAAACCTCCCTACAGATTGGTATTTTCTAGATTGTAACAATATGTACGTGCAACTTTGCTACAGATATGGAAATTGGAAATTTCCTTTTGTATTATACACCCAAAACAAGGATCTTTGTGATAATTTTGAAATTGAGAGCAGCTCTGTTATGTACCTTAGATCTGAATATGCTCTCTCATACAAAAATATTCAAGAATATCATAGAAAATCCCTTTTACTTTATTATATAAAAATACTTTTGTTCC

Fln Alignment:

sp_v1.1_unigene10496___LGLYAIFDGHLGDTVAAYLQKNLFANILSEEEFWVHPSRSIMKAYDKTDKAILIHSPDLARGGSTAVTAILIDSLKLLVANVGDSRAVLSKNGRAIQLSVDHEPST--ERGSIENRGGFVSNIPGDVPRVNGQLAVSRAFGDRSLKTHLRSDPDVKEWDVDSETQFLILASDGLWKVMDNQEAVNFVSKIRDPQIAAKQLTAEAVKRESKDDISCIVVQF
A9NV16_______________LGLFAIFDGHLGDNVPSYLQKNLFQNILNEEEFWFHPRRAITKAYEKTDKAILREAPNLGPGGSTAVTAILIDGSKLLVANVGDSRAVLSQNGKASQLSVDHEPGTSAERGSIENRGGFVSNMPGDVPRVDGQLAVSRAFGDKSLKSHLRSDPDVREVDIDLTTEFLILASDGLWKVMGNQEAVDFIKKIRDPQVAAKQLTAEALNRESKDDISCVVVRF

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
216		20		80	0.999996
227		90		10	0.90298
228		90		10	0.90298
229	90		10		0.90298
232		90	10		0.90298
235		10		90	0.90298
238		10	90		0.90298
239	10		90		0.90298
244		10		90	0.90298
245	10			90	0.90298
869	88		11		0.923564
1092	20			80	0.995493
1093			20	80	0.995493
1099	80		20		0.995493
1100	80	20			0.995493
1104	80		20		0.995493
1105			16	83	0.994512
1109	16			83	0.994512
1115		16	83		0.994512
1169	66	33			0.997452
1170		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain