SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10495

Length: 1463 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene10495 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	zinc finger (C2H2 type) family protein	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	66%
Blast2go	zinc finger family protein	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	71%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	71%
Blast2go	intracellular	GO:0005622	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, C2H2	IPR007087	-	0.0	71%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: E0CUZ7

Fln msg: Distance to subject end: 218 aas, your sequence is shorter than subject: 475 - 703

Fln protein: MKESIQSKMKGAGAFGKGLHSPTQLMHSLKIPEAVVAFAQAAAKTNGEQDKYLPGWPLLSPKVQMLRCEKCSQEFCSSLNHRRHTRMHRRRLNMEKEDLRKERANIAAFWDKLSVEEARQVVSFNNVMLKEVPETSIVRTLSSFIQQPALSSLPHFYLKAGAALLDVVQVKSSKFPLAAKDLFNILDDASERTFLCAGSSVSVQRLVFEGEGGNVGPEVKNLVASLGFLVEQKLVKAWIADKDAEALRCQKELVEEEEAIQKKQAELLEKKRLKKLRQQESREKGRRVGNPGIAVGRGAVDGADIFTELVGVHSLIAVETGTPSTAQDLSNQEQSGDVTSFEVERSEKVESKISQFLGQEFSHGSNSVNKNADQIHICEENTHLNIDRVSAEEVGEAQNASIFAEEAGEAQNASNVRRNHTDFDLSNSHVSAAEAPLTTVPCLASKQGDEDNSILEYDTRTVMHSDKQFVQGWRQ

Protein Length: 476

Fln nts: GTAGCTGTTGATTGTGCTTCTACAGATTCCAATCAA_-_ATGAAGGAGTCAATTCAGAGCAAAATGAAGGGAGCAGGTGCCTTTGGTAAAGGCTTACACAGTCCTACCCAACTTATGCATTCACTCAAAATTCCAGAGGCAGTAGTTGCTTTTGCACAGGCTGCTGCAAAGACCAATGGTGAACAGGACAAATATCTTCCTGGATGGCCCTTACTTTCACCCAAAGTACAAATGCTCAGGTGCGAAAAATGCTCTCAGGAGTTTTGTTCCTCCCTAAATCATCGGAGGCACACTCGGATGCATCGCCGTCGTTTGAACATGGAAAAGGAGGATTTGCGCAAAGAAAGGGCAAACATAGCTGCTTTTTGGGATAAGCTTTCTGTTGAGGAGGCTAGACAAGTTGTCTCATTCAACAACGTTATGTTGAAGGAGGTGCCTGAAACATCCATTGTCAGGACCCTATCATCTTTTATTCAGCAGCCTGCACTTTCCTCTCTGCCACATTTTTATCTCAAGGCTGGGGCTGCTCTACTGGATGTGGTGCAAGTCAAATCATCCAAGTTTCCACTTGCTGCCAAAGATCTATTCAACATATTGGATGATGCAAGTGAAAGGACCTTTTTATGTGCAGGATCATCTGTGTCTGTACAAAGGCTTGTATTTGAAGGAGAAGGAGGAAATGTTGGACCAGAGGTGAAGAATCTGGTTGCTTCCCTGGGTTTCTTGGTTGAGCAGAAATTGGTCAAGGCATGGATAGCTGATAAGGATGCAGAAGCTCTTCGCTGTCAGAAGGAGCTTGTCGAGGAAGAAGAAGCTATCCAGAAGAAGCAAGCAGAGCTTCTTGAAAAAAAACGTTTGAAAAAACTAAGGCAGCAAGAGTCTAGAGAAAAAGGGAGAAGAGTTGGCAATCCAGGTATTGCAGTAGGTAGGGGTGCTGTTGATGGTGCAGATATTTTTACAGAGCTAGTTGGAGTCCATTCTCTGATAGCAGTTGAAACCGGCACTCCATCTACAGCACAGGATCTAAGCAATCAAGAACAATCAGGTGATGTTACTAGCTTTGAGGTGGAAAGGAGTGAAAAGGTTGAATCAAAGATTTCACAATTTCTTGGACAAGAATTTTCCCATGGATCAAATTCTGTTAATAAGAATGCTGATCAGATCCATATTTGTGAAGAAAATACACACTTGAATATAGATAGAGTCTCTGCAGAAGAAGTTGGTGAAGCACAAAATGCAAGTATCTTTGCAGAAGAAGCTGGTGAAGCACAAAATGCAAGTAATGTGAGAAGAAATCATACTGATTTTGACTTGAGCAATTCTCACGTTTCAGCAGCAGAGGCTCCACTGACCACTGTGCCATGTTTGGCAAGCAAACAAGGAGATGAGGATAATAGCATTTTGGAATATGATACGAGGACTGTCATGCATTCAGACAAGCAATTTGTGCAGGGCTGGAGACAACG

Fln Alignment:

sp_v1.1_unigene10495___LPGWPLLSP-KVQMLRCEKCSQEFCSSLNXXXXXXXXXXRLNMEKEDLRKERANIAAFWDKLSVEEARQVVSFNNVMLKEVPETSIVRTLSSFIQQPALSSLPHFYLKAGAALLDVVQVKSSKFPLAAKDLFNILDDASERTFLCAGSSVSVQRLVFEGEGGNVGPEVKNLVASLGFLVEQKLVKAWIADKDAEALRCQKELV
E0CUZ7_______________LPGWPLLSPLKVQMQKCEKCSKEFCSPINYRRHIRVHRRTLNIDK-DSTKNRNLLGAFWDKLSVDEAKEVVSFKNVSLEEVSGSSIVRALTSFVRKPGFSSLPQVYMKAGSALLDIVQSRPSRFPISSQDLFSILDDASEKTFLCAGTAESMQKYVFDGEAGKIGLEMKNLVACTCFLVEQKLVKAWLADKDAEALRCHKLLV

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1131		33		66	0.997452
1132		33		66	0.997452
1133		33		66	0.997452
1134	33		66		0.997452
1135		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain