SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10457

Length: 519 nt

Origin of reads: Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene10457
CGTCGTGACCTTGGCTGTCACTCATTTTTTTCTCTGTCGACATGATCATATAAAGAGGGTGGCACATATGCTCGACAGAGTGCCAGGACTGTCACTTGAAGACCGGTACAATTTTTGCTTTTCACCTGTAAATACAAGGGACCCCCAAGCAATGAGCAGTCTACTAAGATTTGCTTTTCAATATAGCAAGAATCTTCCTGTTCGCATAGCGATGGGTGTTCCTAAAGAGTCTGCAAAAAATGACGAGGATCTTTTAAATCTTGAGACGAAGCATCAAGTCTTATCCATGTATATGTGGCTATCCCAACACTTCAGTGAGGGGACATTTCCATATAAGGAGACAGCTGAGCGCATGGCCTCAGATATTGCAGATCTACTTGGCCAATCTCTTGCTAAAGCTCGGTGGAAACCGGAGTCAAGGGGAAGGATCGCGAAGAAAGCTCCACCAGAAAAGGGTGGTCCTGTTGCACGGCAACTTCTACTTATGAAAGCGAGGCAACAAAGGAAAGTGGCATGCTA

Ace file of the UniGene sp_v1.1_unigene10457 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent RNA and DNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SEF1_RICCO	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	65%
Blast2go	atp-dependent rna and dna	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	ATP-dependent RNA helicase activity	GO:0004004	Molecular Function	76%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	76%
Blast2go	ATP binding	GO:0005524	Molecular Function	76%
Blast2go	mitochondrion	GO:0005739	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Mitochondrial degradasome RNA helicase subunit, C-terminal domain	IPR022192	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6H5S4

Fln msg: Distance to subject end: 17 aas, your sequence is shorter than subject: 172 - 806

Fln protein: VVTLAVTHFFLCRHDHIKRVAHMLDRVPGLSLEDRYNFCFSPVNTRDPQAMSSLLRFAFQYSKNLPVRIAMGVPKESAKNDEDLLNLETKHQVLSMYMWLSQHFSEGTFPYKETAERMASDIADLLGQSLAKARWKPESRGRIAKKAPPEKGGPVARQLLLMKARQQRKVAC

Protein Length: 173

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTTCTCTGTCGACATGATCATATAAAGAGGGTGGCACATATGCTCGACAGAGTGCCAGGACTGTCACTTGAAGACCGGTACAATTTTTGCTTTTCACCTGTAAATACAAGGGACCCCCAAGCAATGAGCAGTCTACTAAGATTTGCTTTTCAATATAGCAAGAATCTTCCTGTTCGCATAGCGATGGGTGTTCCTAAAGAGTCTGCAAAAAATGACGAGGATCTTTTAAATCTTGAGACGAAGCATCAAGTCTTATCCATGTATATGTGGCTATCCCAACACTTCAGTGAGGGGACATTTCCATATAAGGAGACAGCTGAGCGCATGGCCTCAGATATTGCAGATCTACTTGGCCAATCTCTTGCTAAAGCTCGGTGGAAACCGGAGTCAAGGGGAAGGATCGCGAAGAAAGCTCCACCAGAAAAGGGTGGTCCTGTTGCACGGCAACTTCTACTTATGAAAGCGAGGCAACAAAGGAAAGTGGCATGCTA

Fln Alignment:

sp_v1.1_unigene10457___FFLCRHDHIKRVAHMLDRVPGLSLEDRYNFCFSPVNTRDPQAMSSLLRFAFQYSKNLPVRIAMGVPKESAKNDEDLLNLETKHQVLSMYMWLSQHFSEGTFPYKETAERMASDIADLLGQSLAKARWKPESRGRIAKKAPPEKGGPVARQLLLMKARQQRK
F6H5S4_______________YFLCRHDHIKKVANMLQKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSQNLPVNIAMGMPKGSARNDSELLDLETKHQVLSMYLWLSHHFTEETFPYVKKAETMATGIADLLGQSLSKACWKPESR-QAGKPKPQQKEDGYERPRSLVKLFDERR

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
226	71		28		1.0
332			12	87	0.992554
432		42		57	1.0
434	42	57			1.0
435	42			57	1.0
442			42	57	1.0
443	42	57			1.0
444		42		57	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain