SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10455

Length: 1908 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10455

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Rhomboid protein, putative	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	rhomboid family protein	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	71%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	71%
Blast2go	UBA-like	IPR009060	-	71%
Blast2go	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	71%
Blast2go	Peptidase S54, rhomboid domain	IPR022764	-	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8E7

Fln msg:

Fln protein: MRSNIVSEASWSTRVGQWWVGVPFITSGLVAVCGIIYLICLLVGYDSFYEICFWPAQLVLRLQVYRIYTSVVFHGSVLHVMFNMMALVPIGSGLERIMGSVRYLHVTLLLATCNAVLHLLIAYLAAHNPVHPYPFFMDECTIGFSGIIFAMIVMETSLNGNQSRSVFGLFNVPGKWYAWILLILFQLLMPNVSLLGHLCGILSGFAYTYGLFNYFLLGLTSYTAIENSAMLACCVRRPGFIVGGASGAAVNGSLPSFPSTASSGAGLSNFWRNVRSWMPPRESLPNQSLQDPRFPGRGRTLVSSQIQSTSRIGSETELQTRLLDRSSQPQAPSPMMPIITRETVTSNARHTHRENSQQSGPTHMNQGHTQTHDEAIQNLVAMGFEKAKAEVALAAANGDLALAVELLSSQE*

Protein Length: 413

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTCTGGGGGAAGCGGGCCAAGGAAGAACGCTTATGTAACAAATTCTGTGGAACACCCAACTGAACGAAATTGATAGAAAAACCACATCATGTTGATGTGCATAATATTTTAAATATTTTAGTACGACAGGAATTCTGCAAGTTTTGGATTGGCAGC_-_ATGAGATCCAACATTGTTTCAGAGGCCAGTTGGTCCACCAGAGTTGGACAGTGGTGGGTGGGAGTTCCATTTATCACATCTGGATTGGTGGCTGTTTGTGGTATTATTTACTTGATATGCCTGCTGGTTGGATATGATTCCTTTTATGAGATCTGTTTCTGGCCAGCACAGTTAGTTTTGCGATTGCAAGTGTATAGGATCTACACCTCTGTGGTATTTCATGGTTCGGTGCTGCATGTTATGTTCAATATGATGGCCTTGGTGCCTATTGGAAGTGGGCTAGAGCGAATTATGGGATCGGTTCGATACTTGCATGTCACATTGCTGCTAGCTACCTGCAATGCGGTTTTGCATCTTCTCATTGCTTATCTGGCAGCGCACAACCCAGTGCATCCTTATCCTTTCTTTATGGATGAGTGTACCATTGGCTTCTCTGGTATCATATTTGCTATGATTGTCATGGAAACTAGCTTAAATGGAAATCAGAGTCGAAGTGTATTTGGACTTTTCAATGTCCCTGGAAAATGGTATGCTTGGATCCTTCTTATCCTGTTCCAGCTTCTAATGCCAAATGTTTCACTCTTAGGACATCTCTGTGGCATTTTGTCTGGGTTTGCATATACCTATGGCTTGTTTAACTACTTCTTATTGGGATTAACATCATATACAGCTATCGAGAACTCTGCAATGCTTGCATGCTGTGTAAGGCGCCCTGGATTCATCGTTGGTGGTGCAAGTGGTGCTGCAGTTAATGGATCACTTCCTTCTTTTCCAAGTACAGCGTCTAGTGGTGCAGGTTTAAGTAATTTTTGGAGAAATGTCCGTTCATGGATGCCACCAAGGGAAAGTTTGCCTAATCAGTCTTTGCAAGATCCTAGATTTCCAGGGAGAGGTCGGACGCTTGTGTCTTCCCAAATTCAATCAACATCAAGGATTGGTTCTGAGACAGAACTACAAACTAGACTTCTTGATAGGAGCAGCCAACCACAAGCACCTTCTCCAATGATGCCAATAATCACTCGTGAGACTGTAACATCAAATGCAAGGCACACACATAGGGAAAATTCACAACAATCAGGCCCTACACATATGAATCAGGGACATACACAAACTCATGATGAAGCCATTCAGAATCTTGTTGCAATGGGATTTGAAAAGGCTAAGGCAGAAGTTGCACTAGCTGCAGCAAATGGAGATTTAGCTCTTGCTGTTGAACTTCTGAGCAGTCAGGAATAA___CAGCATTCTAAATTTTGCTTTAAATTAGCATGGAAGTTCGCAACATGTTTAAGATGAGGATAAAGTTCTCCAATCCTGGAGCGGAAATGTGCATTACACATGGTTCCAATGTAAATAAATGCAGTATTTTTTGTCTTGCTTCTTCCAATTTCCCAGTTTGCTTGCCAATGGATTTTAATTGAGTGCTTTCTCCATGTCAAGAGCAAGTCTTAATGAGAATTAAAATGTTCCAATACTGGATGAAGCTCATTCAGGGCCTTCTGTTATAGTTGGCTTGTTTCTTTGTTTTCATCAGACCATACTATTTAAGAGGTTCTACCCCAAAGAACTAGGGAAAAAAATCAGAGTGGCTGAATTTAATTTGAATTCAATCCAAATTATACTACAACAAACAACAGAATTGATAGTGTATGCCATTCTGAATTATGCACTGTACTTAGATGAGAGGAATTTAACTTTTTATCATAATAGATAACCTTGCCAAGATTTG

Fln Alignment:

sp_v1.1_unigene10455___MRSNIVSEASWSTRVGQWWVGVPFITSGLVAVCGIIYLICLLVGYDSFYEICFWPAQLVLRLQVYRIYTSVVFHGSVLHVMFNMMALVPIGSGLERIMGSVRYLHVTLLLATCNAVLHLLIAYLAAHNPVHPYPFFMDECTIGFSGIIFAMIVMETSLNGNQSRSVFGLFNVPGKWYAWILLILFQLLMPNVSLLGHLCGILSGFAYTYGLFNYFLLGLTSYTAIENSAMLACCVRRPGFIXXXXXXXXXXXXLPSFPSTASSGAGLSNFWRNVRSWMPPRESLPNQSLQDPRFPGRGRTLVSSQIQSTSRIGSETELQTRLLDRXXXXXXXXXXXXIITRETVTSNARHTHRENSQQSGPTHMNQGHTQTHDEAIQNLVAMGFXXXXXXXXXXXXXXXXXXXVELLSSQE
D5A8E7_______________MRSNIVSEASWSTRVGQWWAGVPFITSGLVAVCGIIYLVCLLVGYDSFYAICFWPAQLILRLQVYRIYTSVVFHGSVLHVMFNMMALVPIGSGLERIMGSVRYLHVTLLLATCNAVLHLLIAYLAAHNPVHPYPFFMDECTIGFSGIIFAMIVMETSLNGNQSRSVFGLFNVPGKWYASILLILFQLLMPNVSLLGHLCGILSGFAYTYGLFNYFLLGLASYTAIESSAMLACCVRRPGFIIGGASGAAATGSLPSFPSTASSGAGLGNVWRSARSLMPQRETLPNQSLQDPRFPGRGRTLGSSQIQSTSRVGSETELQTRLLERSSQPEAPSQMMPISTRETATSNARHTPRENSQESGPTHINQEHTQNH-ETIQNLVAMGFEKAKAEVALDAANGDVALAVELLSSQE

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
609	14			85	0.999981
806	88		11		0.923564
814		77		22	0.999999
1048		33		66	0.997452
1415		10	90		0.90298
1418	90	10			0.90298
1419	87		12		0.992554
1421	87		12		0.992554
1424	87	12			0.992554
1425			87	12	0.992554
1426		87		12	0.992554
1427	87		12		0.992554
1428		12		87	0.992554
1430		87	12		0.992554
1432	87	12			0.992554
1434	87	12			0.992554
1436		12		87	0.992554
1439			37	50	1.0
1561	11	88			0.999937
1562		11		88	0.999937
1567		88	11		0.999937
1569	88			11	0.999952
1570	88		11		0.999952
1572		12		87	0.999964
1573	12			87	0.999964
1575		87		12	0.999964
1756	10		90		0.90298
1798	88		11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain