SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10421

Length: 1044 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10421

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Multidrug/pheromone exporter, MDR family, ABC transporter family n=2 Tax=Malpighiales RepID=B9IFR5_POPTR	-	-	66%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	65%
Blast2go	p-glycoprotein 1	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	0.0	88%
Blast2go		EC:3.6.3.3-	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	88%
Blast2go	positive gravitropism	GO:0009958	Biological Process	88%
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	88%
Blast2go	auxin polar transport	GO:0009926	Biological Process	88%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	88%
Blast2go	response to blue light	GO:0009637	Biological Process	88%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	88%
Blast2go	regulation of cell size	GO:0008361	Biological Process	88%
Blast2go	anthocyanin accumulation in tissues in response to UV light	GO:0043481	Biological Process	88%
Blast2go	stamen development	GO:0048443	Biological Process	88%
Blast2go	response to nematode	GO:0009624	Biological Process	88%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	88%
Blast2go	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	88%
Blast2go	ATP binding	GO:0005524	Molecular Function	88%
Blast2go	auxin efflux transmembrane transporter activity	GO:0010329	Molecular Function	88%
Blast2go	ferric-transporting ATPase activity	GO:0015408	Molecular Function	88%
Blast2go	integral to membrane	GO:0016021	Cellular Component	88%
Blast2go	plastid	GO:0009536	Cellular Component	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ABC transporter-like	IPR003439	-	0.0	88%
Blast2go	ABC transporter, conserved site	IPR017871	-	0.0	88%

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
647	87		12		0.992554
746	33	66			0.997452
747		33		66	0.997452
749		33		66	0.997452
750	33	66			0.997452
964	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain