SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10406

Length: 1081 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10406

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	3-methylcrotonyl-CoA carboxylase (EC:6.4.1.4); K01969 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]	-	-	74%
FL-Next	sp=Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	76%
Blast2go	protein	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Methylcrotonoyl-CoA carboxylase.	EC:6.4.1.4	-	0.0	86%

Source	KEGGs	Term	Type	Identity
Blast2go	Valine, leucine and isoleucine degradation	00280		86%
Blast2go	Metabolic pathways	01100		86%
Blast2go	Biotin carboxylase.	EC:6.3.4.14	-	86%

Source	KEGGs	Term	Type	Identity
Blast2go	Fatty acid biosynthesis	00061		86%
Blast2go	Metabolic pathways	01100		86%
Blast2go	Propionyl-CoA carboxylase.	EC:6.4.1.3	-	86%

Source	KEGGs	Term	Identity
Blast2go	Valine, leucine and isoleucine degradation	00280	86%
Blast2go	Glyoxylate and dicarboxylate metabolism	00630	86%
Blast2go	Propanoate metabolism	00640	86%
Blast2go	Carbon fixation pathways in prokaryotes	00720	86%
Blast2go	Metabolic pathways	01100	86%

Source	ECs	Term	Type	e value	Identity
AutoFact	Methylcrotonoyl-CoA carboxylase.	EC:6.4.1.4	-	0.0	74%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Valine, leucine and isoleucine degradation	00280		0.0	74%
AutoFact	Metabolic pathways	01100		0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	leucine catabolic process	GO:0006552	Biological Process	86%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	86%
Blast2go	methylcrotonoyl-CoA carboxylase activity	GO:0004485	Molecular Function	86%
Blast2go	transferase activity	GO:0016740	Molecular Function	86%
Blast2go	biotin carboxylase activity	GO:0004075	Molecular Function	86%
Blast2go	propionyl-CoA carboxylase activity	GO:0004658	Molecular Function	86%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	86%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Carboxyl transferase	IPR000022	-	0.0	86%
Blast2go	Acetyl-coenzyme A carboxyltransferase, N-terminal	IPR011762	-	0.0	86%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9LDD8

Fln msg: Distance to subject end: 312 aas, your sequence is shorter than subject: 299 - 587

Fln protein: MSQLLLRRLRVSKYRSVTGFSPSFPGPCLNGLPILTKLADKPESTSKFDRGWVCSNTWECRRITTATINRGLNVIPDTLDKNSEIYIQNYEATEKLLAELHQNIDKVLKGGGPKAVERNRARKKLLARERIDRVLDPGSSFLELSQLAGHELYEEPLPSGGIVTGIGPVNRKLCLFVANDPTVKGGTYYPITIKKHLRAQEIAAQCNLPCIYLVDSGGVNLPRQADVFPDKEHFGRIFYNQAQMSAAGIPQIALVLGSCTAGGAYIPAMADENVLVKGNGTIFLAGPPLVKAATGEEVS

Protein Length: 300

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTCTACGTCGTGACCTTGGCTGTCACTCAATTTTCCAATAATCAATTTATCCATTTGACATACTCATGTAATACTCAGACAAGTTGTGCTCGAAGATCCGTACTGGTCCGCAAAATAGTTGCCTTGAAGATTCATACTACTGCGAAAGGATCTGAG_-_ATGTCTCAACTGCTGTTACGAAGGCTCAGGGTCTCCAAATATCGTAGTGTAACAGGATTCAGTCCCTCTTTTCCAGGGCCTTGTCTAAATGGGCTTCCAATCCTTACAAAATTGGCGGATAAGCCTGAATCTACCTCCAAATTTGATCGGGGTTGGGTATGCAGTAATACTTGGGAGTGCAGAAGGATAACTACTGCCACAATAAACAGAGGCCTGAATGTCATCCCCGATACTCTCGATAAAAATAGCGAAATTTATATTCAAAATTACGAGGCGACGGAAAAGCTTTTAGCCGAGCTTCACCAGAATATTGATAAGGTGCTGAAAGGAGGGGGTCCTAAAGCAGTAGAAAGGAACCGTGCGAGGAAGAAGCTGCTGGCTAGGGAGCGCATTGACCGTGTACTGGATCCTGGATCCTCATTCCTTGAACTGTCTCAGCTTGCAGGACATGAGTTATATGAGGAGCCGTTACCCTCTGGAGGGATTGTGACAGGAATAGGGCCCGTTAATAGGAAGTTGTGTTTGTTTGTAGCCAATGACCCTACTGTCAAAGGTGGGACTTATTATCCTATCACCATTAAGAAGCATCTTCGTGCACAAGAAATTGCTGCACAGTGCAATCTACCTTGCATATATCTTGTTGATAGTGGTGGTGTTAATCTTCCAAGACAGGCAGATGTCTTTCCTGACAAAGAACATTTTGGAAGAATATTTTACAATCAGGCACAGATGTCAGCTGCAGGAATTCCACAGATTGCTTTGGTATTAGGTTCTTGCACTGCTGGAGGGGCTTATATTCCTGCAATGGCCGATGAAAATGTTCTTGTCAAAGGCAACGGCACTATTTTTTTAGCTGGACCTCCTCTTGTCAAGGCTGCAACTGGAGAAGAAGTGTCTGA

Fln Alignment:

sp_v1.1_unigene10406___LNVIPDTLDKNSEIYIQNYEATEKLLAELHQNIDKVLKGGGPKAVERNRARKKLLARERIDRVLDPGSSFLELSQLAGHELYEEPLPSGGIVTGIGPVNRKLCLFVANDPTVKGGTYYPITIKKHLRAQEIAAQCNLPCIYLVDSGGVNLPRQADVFPDKEHFGRIFYNQAQMSAAGIPQIALVLGSCTAGGAYIPAMADENVLVKGNGTIFLAGPPLVKAATGEEVS
Q9LDD8_______________VGILPDGVDRNSEAFSSNSIAMEGILSELRSHIKKVLAGGGEEAVKRNRSRNKLLPRERIDRLLDPGSSFLELSQLAGHELYEEPLPSGGIITGIGPIHGRICMFMANDPTVKGGTYYPITIKKHLRAQEIAARCRLPCIYLVDSGGAYLPKQAEVFPDKENFGRVFYNESVMSSDGIPQIAIVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEVS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain