SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10400

Length: 932 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene10400 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lipase_GDSL domain containing protein	-	-	6.0e-19	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	alpha-l-fucosidase 2	-	-	0.0	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	0.0	63%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lipase, GDSL	IPR001087	-	0.0	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMG5

Fln msg: your sequence is shorter than subject: 300 - 381

Fln protein: EAMNLTLLSPYLESVGSDFKHGSNFACAGSTVNQSATTFSLPVQVNQFNSF*AWVMALFSQGGPATVNLPQPDIFDKALYTLDIGQNDISHAFSSNLTEIQINTVVIPQIINELISQLKYLYQQGARNFVVHNTGPLGCLPRTLADIRSDLSELDEHGCAVAYNRACQTFNLKLKNVCQQLRAQFSDAAIVYVDIYSIKYALIANASQYGFEHPLAACCGYGGLPYNYYDKLRCAETGAVNGSTVTAGACKDPTKSVSWDGIHYSETANLHIASQVMSADFSEPALSPHQACHPNLEIK*

Protein Length: 301

Fln nts: GCGAGGCAATGAATCTGACATTACTGAGCCCGTATTTGGAGTCGGTTGGCTCCGACTTTAAGCATGGATCAAACTTCGCATGCGCTGGCTCCACCGTTAATCAGTCGGCCACCACTTTTTCTTTGCCTGTTCAAGTGAATCAGTTTAACAGCTTCTGAGCTTGGGTGATGGCTCTATTTTCCCAGGGTGGTCCGGCTACTGTCAACCTCCCACAGCCGGACATCTTCGACAAAGCCCTTTACACCCTGGACATTGGCCAAAATGACATTTCACATGCCTTCAGTTCGAATCTCACGGAGATACAAATAAATACCGTGGTCATTCCCCAGATTATTAACGAATTAATATCGCAACTGAAGTATTTGTACCAGCAAGGGGCTCGGAATTTCGTGGTTCACAACACGGGACCTCTGGGATGTTTGCCGCGAACCCTTGCGGACATTCGCAGCGACTTATCAGAACTGGATGAGCATGGCTGTGCTGTAGCTTACAACAGAGCCTGCCAAACTTTTAATCTGAAGCTGAAAAATGTGTGCCAACAGCTCAGAGCACAATTCTCGGATGCCGCCATTGTTTATGTCGACATTTATTCAATCAAATACGCTCTCATAGCAAATGCATCTCAATATGGATTCGAACACCCGCTGGCAGCCTGCTGCGGGTATGGCGGTTTGCCATACAACTATTATGATAAATTGCGCTGCGCTGAGACTGGTGCAGTTAACGGGAGCACTGTTACAGCAGGGGCATGCAAGGATCCCACGAAATCCGTGAGCTGGGATGGAATTCATTATTCTGAAACTGCAAATCTTCATATTGCTTCACAAGTAATGTCTGCCGATTTCTCCGAACCCGCATTATCTCCTCACCAAGCGTGCCATCCTAATCTAGAGATAAAATAA___TAGCACTAAAGCCTCCAGATTTTTTTAGTT

Fln Alignment:

sp_v1.1_unigene10400___EAMNLTLLSPYLESVGSDFKHGSNFACAGSTVNQSATTFSLP----VQVNQFNSF*AWVMALFSQGGPATVNLPQPDIFDKALYTLDIGQNDISHAFSS-NLTEIQINTVVIPQIINELISQLKYLYQQGARNFVVHNTGPLGCLPRTLADIRSDLSELDEHGCAVAYNRACQTFNLKLKNVCQQLRAQFSDAAIVYVDIYSIKYALIANASQYGFEHPLAACCGYGGLPYNYYDKLRCAETGAVNGSTVTAGACKDPTKSVSWDGIHYSETANLHIASQVMSADFSEPA
B8LMG5_______________QALGLPFISPFLQSVGSRFEQGANFAASGASVRPTSTDFNAPISLTVQLNQFKVFKQQVLDTISSHGSLNY-LPSADSFKTGIYTIEIGGNDFDNAYRSLKLSPLQVKQTILPKLAKSVGGAVQELYNEGARTILVKDVGPQGCGPFWLTYFSHAPTDFDQHGCSISYNDAVQFYNTQLREQLSLVRKQLPGADIVYVSQYDIIYDFFANPSKYGFKATTQSCCGVGG-KYNFTWAAQCGLTGPVNGKSVTVGSCSDPASYIIWDGIHLTDQANRVLTQQILGGKYFEPS

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
159		12		87	0.992554
205		87		12	0.992554
250	12		87		0.992554
271		88		11	0.923564
371		12		87	0.992554
374	12	12	75		0.975346
375	87			12	0.992554
376			85	14	0.993533
534		25		75	0.996473
535		25		75	0.996473
536		25	75		0.996473
761	66			33	0.997452
762			33	66	0.997452
764			33	66	0.997452
765		66		33	0.997452
766		66	33		0.997452
771		66	33		0.997452
774	33		66		0.997452
777		66	33		0.997452
780	33			66	0.997452
784	66	33			0.997452
785			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain