SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10383

Length: 1979 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene10383
TATTGCAGGGGCTTAAAAGGAATCAGGACCTTAGTGGGTTGCCTCCACGGACCTCTAATTCTCGTTTCCAATCGTTCCTTGAAACCAGGGAAACTATTTTACAAAGCCCAGTTCGATTGAACAATGAGAAGCTGTATTCTACTCCTCAAATTCCGTCTTGCAGCAATACGTCAGATGACGAGTGGGGAAACAGCATCCACAGATTGCATACGCGTATAAACAGGGGAGCTTCTAAACCGGTTATAAAAAGGCATAGCTCCTCCGACACTGCCAAGTCGGTCAATTCAATAGAAATGGCGGATGATGGTTTTGAAAAGGCACGTTTGTCATCAGCTAGTGATGTGCCTTTTACGGAACACAGACGCCTAGTGGTTTCCTCTCCTTCTCGGGCTCTGCATGCACAAGCCAAGTTAAAGAGTTGGAGAGATTGGGTTCCGGAGTCCAAAGTGGGGTTGCATTCAAATCAGGAGAGCGAATCGCCTTCCGTGGTTTCATCAGAGATTTCCTCAGCAAAGGAAATTCATACTAATGCCGGGGCCTTCGTTGCACAGGAAGCAAGCCAAGACATTGGATCGGAACCACCTGTTGACAGTGGGGAAGAATCGGATGATCTTGGATCATATGTTATTGAAATTAATGCCCAGAAAGGGGAGACCTTTGCTTTTCTTCCAGAGAAGGACATTCAAGTAGATACTAGCAATGCATCTGATCCTGAAACAATGGAATGGGCAAATGAGAAATTCTTAACAAGAAGGATAGCAGAAGGATTGGCTCATCATGCCAAAGGGGGTAAATTAAAAAGACAAGATAATGATGTTGATACTTTACGGTATGTAGAAGCCAGGATGCAAATTACTAAAGAAATTGTCAAAAAGAAAGCGTCCAGTAAAAGGTCTACTGACCAACAGACTACTGAAAGATCTACAAGTTCAAATCCAGTTACAGAGGTCATTTGCAGCAAGATAACCATGGAACAAAATATTTATTCGGCCGCCTCTCCTACAGTTCCTAAGGAAAAGTTGATAAATGACGTCCGAAGGGAAACTCTGGCGAATCCTTATTCAATTGACATCCCAAGCATGGTTCAGGAAGTCTCTCAAAGGATAGAGAGATGGCAGTGTGAGAAACCTGTAGTTTTCCGTGAAATTTCAGTAGCACCGGAAAGGAAAAACAGCTTAGAATCATTTTCTGATGGAGCAACTGCGAGGAAGACTCCTGAAATTATGAGAAAAGGACCGGAGATAGAACGCCGGCACCAAAGTGGTGAGCGTTTGTCAAAAAGCGTGGTCGAAAAGAAGCAAAATGATTTAGAAGCAGAACGAGAACAATCAGAGAAAATTAAAAGCCCAGAAACACTGGATAGCGAGATAAAACGCTGGTCAGCGGGCAAGGAAGGCAATATTCGTTCCTTGCTATCAACGATGCAATATGTACTTTGGCCAGAGAGTGGATGGAAGCCAGTTCCCTTAATTGAGATTATTGAAGGGGTTGCTGTGAAGAAAGCCTATCAAAGGGCAAGGCTCTGTGTACATCCAGATAAATTGCAACAAAAAGGTGCAACCTTTCAGCAAAAGTACATTGCTAAGAGGGTCTTTGACATTCTACAGGAAGCGTGGACGATCTTTAATTCATTAGATCCCTTCTAATGTTTCAACAGCATGGATGATGAAGCATAACAGCTGTGGCGGGATTCAATATTTTATTTTGTGAATAACATTAGCAGTTTTCTTAGTCCCTCCGAAATCTTCATATCCTATTTGCATTTCCTTAGTGCATAAATATGGTTCAGTGTTTGTATGGTGTGAAGCGGACTGCTTTGGTGTATATAAAAAAAAGGTCATTTTATACCATGCCTTTGTAACTTGGTCACATAAGGCTGAATTTTGCAAAAGATAACTTCATTTTGCTTTGATCTGGATTGAAACTGTACGAGTGTAGAGTTTTGTAATCTGAAAAACCATAAACCATTTTCTTTGCCG

Ace file of the UniGene sp_v1.1_unigene10383

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Auxilin, putative n=1 Tax=Ricinus communis RepID=B9SF05_RICCO	-	-	9.80909e-45	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	heat shock protein binding	-	-	2.66247e-44	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	heat shock protein binding	GO:0031072	Molecular Function	2.66247e-44	77%
Blast2go	cytosol	GO:0005829	Cellular Component	2.66247e-44	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.66247e-44	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock protein DnaJ, N-terminal	IPR001623	-	2.66247e-44	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAW0

Fln msg: your sequence is longer than subject: 451 - 112

Fln protein: MADDGFEKARLSSASDVPFTEHRRLVVSSPSRALHAQAKLKSWRDWVPESKVGLHSNQESESPSVVSSEISSAKEIHTNAGAFVAQEASQDIGSEPPVDSGEESDDLGSYVIEINAQKGETFAFLPEKDIQVDTSNASDPETMEWANEKFLTRRIAEGLAHHAKGGKLKRQDNDVDTLRYVEARMQITKEIVKKKASSKRSTDQQTTERSTSSNPVTEVICSKITMEQNIYSAASPTVPKEKLINDVRRETLANPYSIDIPSMVQEVSQRIERWQCEKPVVFREISVAPERKNSLESFSDGATARKTPEIMRKGPEIERRHQSGERLSKSVVEKKQNDLEAEREQSEKIKSPETLDSEIKRWSAGKEGNIRSLLSTMQYVLWPESGWKPVPLIEIIEGVAVKKAYQRARLCVHPDKLQQKGATFQQKYIAKRVFDILQEAWTIFNSLDPF*

Protein Length: 452

Fln nts: TATTGCAGGGGCTTAAAAGGAATCAGGACCTTAGTGGGTTGCCTCCACGGACCTCTAATTCTCGTTTCCAATCGTTCCTTGAAACCAGGGAAACTATTTTACAAAGCCCAGTTCGATTGAACAATGAGAAGCTGTATTCTACTCCTCAAATTCCGTCTTGCAGCAATACGTCAGATGACGAGTGGGGAAACAGCATCCACAGATTGCATACGCGTATAAACAGGGGAGCTTCTAAACCGGTTATAAAAAGGCATAGCTCCTCCGACACTGCCAAGTCGGTCAATTCAATAGAA_-_ATGGCGGATGATGGTTTTGAAAAGGCACGTTTGTCATCAGCTAGTGATGTGCCTTTTACGGAACACAGACGCCTAGTGGTTTCCTCTCCTTCTCGGGCTCTGCATGCACAAGCCAAGTTAAAGAGTTGGAGAGATTGGGTTCCGGAGTCCAAAGTGGGGTTGCATTCAAATCAGGAGAGCGAATCGCCTTCCGTGGTTTCATCAGAGATTTCCTCAGCAAAGGAAATTCATACTAATGCCGGGGCCTTCGTTGCACAGGAAGCAAGCCAAGACATTGGATCGGAACCACCTGTTGACAGTGGGGAAGAATCGGATGATCTTGGATCATATGTTATTGAAATTAATGCCCAGAAAGGGGAGACCTTTGCTTTTCTTCCAGAGAAGGACATTCAAGTAGATACTAGCAATGCATCTGATCCTGAAACAATGGAATGGGCAAATGAGAAATTCTTAACAAGAAGGATAGCAGAAGGATTGGCTCATCATGCCAAAGGGGGTAAATTAAAAAGACAAGATAATGATGTTGATACTTTACGGTATGTAGAAGCCAGGATGCAAATTACTAAAGAAATTGTCAAAAAGAAAGCGTCCAGTAAAAGGTCTACTGACCAACAGACTACTGAAAGATCTACAAGTTCAAATCCAGTTACAGAGGTCATTTGCAGCAAGATAACCATGGAACAAAATATTTATTCGGCCGCCTCTCCTACAGTTCCTAAGGAAAAGTTGATAAATGACGTCCGAAGGGAAACTCTGGCGAATCCTTATTCAATTGACATCCCAAGCATGGTTCAGGAAGTCTCTCAAAGGATAGAGAGATGGCAGTGTGAGAAACCTGTAGTTTTCCGTGAAATTTCAGTAGCACCGGAAAGGAAAAACAGCTTAGAATCATTTTCTGATGGAGCAACTGCGAGGAAGACTCCTGAAATTATGAGAAAAGGACCGGAGATAGAACGCCGGCACCAAAGTGGTGAGCGTTTGTCAAAAAGCGTGGTCGAAAAGAAGCAAAATGATTTAGAAGCAGAACGAGAACAATCAGAGAAAATTAAAAGCCCAGAAACACTGGATAGCGAGATAAAACGCTGGTCAGCGGGCAAGGAAGGCAATATTCGTTCCTTGCTATCAACGATGCAATATGTACTTTGGCCAGAGAGTGGATGGAAGCCAGTTCCCTTAATTGAGATTATTGAAGGGGTTGCTGTGAAGAAAGCCTATCAAAGGGCAAGGCTCTGTGTACATCCAGATAAATTGCAACAAAAAGGTGCAACCTTTCAGCAAAAGTACATTGCTAAGAGGGTCTTTGACATTCTACAGGAAGCGTGGACGATCTTTAATTCATTAGATCCCTTCTAA___TGTTTCAACAGCATGGATGATGAAGCATAACAGCTGTGGCGGGATTCAATATTTTATTTTGTGAATAACATTAGCAGTTTTCTTAGTCCCTCCGAAATCTTCATATCCTATTTGCATTTCCTTAGTGCATAAATATGGTTCAGTGTTTGTATGGTGTGAAGCGGACTGCTTTGGTGTATATAAAAAAAAGGTCATTTTATACCATGCCTTTGTAACTTGGTCACATAAGGCTGAATTTTGCAAAAGATAACTTCATTTTGCTTTGATCTGGATTGAAACTGTACGAGTGTAGAGTTTTGTAATCTGAAAAACCATAAACCATTTTCTTTGCCG

Fln Alignment:

sp_v1.1_unigene10383___LEAEREQSEKIKSPETLDSEIKRWSAGKEGNIRSLLSTMQYVLWPESGWKPVPLIEIIEGVAVKKAYQRARLCVHPDKLQQKGATFQQKYIAKRVFDILQEAWTIFNSLDPF
D5AAW0_______________MQAQRDQAERHRFAETLDAEIKRWAAGKEGNLRALLSTLQYVLWPESGWQAVSLTDIIIGSSVKKVYRKATLCVHPDKVQQKGATIQQKYIAEKVFDLLKEAWNKFNSEELF

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
160	20			80	0.995493
163		80	20		0.995493
164	80		20		0.995493
610			16	83	0.994512
777	80		20		0.995493
780	80		20		0.995493
783	20	80			0.995493
785	80	20			0.995493
786	80			20	0.995493
787	80			20	0.995493
790		20	80		0.995493
791			80	20	0.995493
795	66	33			0.997452
1252	16		83		0.994512
1253		83		16	0.994512
1254		83	16		0.994512
1384	20		80		0.995493
1468	14		85		0.993533
1514		16		83	0.994512
1577		66	33		0.997452
1578	66	33			0.997452
1748			16	83	0.994512
1750	83	16			0.994512
1751		16	83		0.994512
1753	16	83			0.994512
1757		83		16	0.994512
1758		83	16		0.994512
1760	83	16			0.994512
1761	83			16	0.994512
1762	83		16		0.994512
1765		16		83	0.994512
1855	33		66		0.997452
1905			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain